Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2927 ATGCATGTTCTCGCACCAGAAGTGCATATTGAAGGTCCACCTGACACATCTCCGTTGTTGATGGAGCGGCTGGGTAGCTTGAACAGCAATCAGCATATGATCGTGCAGCCGGAGAGGTTGAATGACAATCAGCATATCATAGACATTAACATAGCTGGAAACGGTGATGCTTCCACTTCAGGCTCAGCTCATGATAGACATTCTAATGGTGTGGATACATCACAGCATGTAGAGAGAGCGGGCAGTGTGAGAGTACCTGTTTCCCAGCCTTCGGTTTTATCCAACAATGGATCCAATGGATCAAACTCCAGGAATTCTTCGTTCATCAGACGTGGAGATTCACGCCGGAGTAGGAGTCCAGTGCATTCGGGGTTGTGGATATCTGTAGAACTAGCACTCTTAGTAAGTCAAATCGTTGCATCAATTGTTGTATTGTCTTTGTCAAGGCACGAGCATCCACGTTCCCCATTGTTTGCGTGGATTGTGGGTTATGCAAGTGGATGTCTTGCTACCCTACCTCTGCTTTATTGGCGGTATTATCATCATAACCAAAGTCGAGATCAAGATTCACCCCAAACCCGTCAAACATCTCCTCGGGTTAATGATCCTTCGGGGACATTTCATTCCAGTTCCAGAAGTAATGGAGGAGCAGATGGTCAAGCTGCTGCTTCACTGTCCAGAAGCAATCAAGCTTCACCATTGACAAACAGAAGGTTATGTATAGTGTTTCTCGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATTATCTCCATCCTTGGCGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATAAATGCCCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGCGACAGTAACTCAGCTGTTGTTGATGGGGGAGTTGTAGCTGCAGGAACTGAAAAGGAGCGAGTGATATCTGGAGATGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAATGATGAGCTGCGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGACTGTGTAGACAAGTGGTTAAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTAACCGGATCGGGCGCTGCAGAAGGTGCCAGCCAATAG 1185 0.454 MHVLAPEVHIEGPPDTSPLLMERLGSLNSNQHMIVQPERLNDNQHIIDINIAGNGDASTSGSAHDRHSNGVDTSQHVERAGSVRVPVSQPSVLSNNGSNGSNSRNSSFIRRGDSRRSRSPVHSGLWISVELALLVSQIVASIVVLSLSRHEHPRSPLFAWIVGYASGCLATLPLLYWRYYHHNQSRDQDSPQTRQTSPRVNDPSGTFHSSSRSNGGADGQAAASLSRSNQASPLTNRRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRSGDSNSAVVDGGVVAAGTEKERVISGDDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENLTGSGAAEGASQ* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2927 394 SUPERFAMILY RING/U-box 327 382 - -
Ahy16g2927 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 384 IPR013083 -
Ahy16g2927 394 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 37 239 - -
Ahy16g2927 394 MobiDBLite consensus disorder prediction 81 120 - -
Ahy16g2927 394 MobiDBLite consensus disorder prediction 189 222 - -
Ahy16g2927 394 SMART ring_2 335 375 IPR001841 -
Ahy16g2927 394 MobiDBLite consensus disorder prediction 87 108 - -
Ahy16g2927 394 Pfam Ring finger domain 335 376 IPR001841 -
Ahy16g2927 394 CDD RING-H2_RNF111_like 334 376 - -
Ahy16g2927 394 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 238 394 - -
Ahy16g2927 394 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
Ahy16g2927 394 MobiDBLite consensus disorder prediction 185 222 - -
Ahy16g2927 394 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 239 - -
Ahy16g2927 394 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 238 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2927 Ahy-Chr16 143667908 143672994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2927 110 386 C3H Transcription Factor Family AT1G80400 50.154 2.82e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2927 - - gmx:100778728 542.347