Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2838 ATGGAAACACCAAGTTTTTTTCAAAACAGCTTCTGCTCTCAATTCACCTCTGATGATGGCGACAACAACAATAACAATAACAACACCGCTGTAAGCACAGGAGACAATTTCATCGTGGAAGATCTCCTTGACTTTTCGAACGATGACGGTATCATTGCCAACAATAACGGTGTTGTTGCCACCTTGGACTCTGTCACAGGAAACTCTGGTTCAGCCAATTCCTCTAATACTACCGTTGTTGAAAGCTGCAATTCCTCCTCCTTCTCTTTCTCTGGTTGCGAACCCAGTATCATTGCGGATATTGGTAGTCGGAGTCTTGTGGATGGTCATTTCTCTGGTGAACTTTGTGTTCCGTATGACGACCTGGCAGAGTTAGAATGGCTTTCCAATTTTGTGGAGGAATCCTTCTCCAGTGAGGATCTACAAAAGATGCAACTCATCTCAGGAATGAAGAGACCAAACGATGATGCTTCATCGGAGGCCCACAAGTTCCGCGCAGAGCCCAACAGAAAAAGCCCAATATTCAACTCAGAAGTGTCAGTGCCAGCCAAGGCCCGTAGCAAGCGGTCTCGTGTGCCTCCATGCAATTGGACTTCGCGCCTACTGGTACTCTCTCCAACTCCGACTCCCACAACGTCATCATCATCAGAACCTGATGTGATGGTCCCTATTTCTACTCCAACTCCAGTGTCCTTCACTATTCCGGTCACCGGAAAAAAGCCGGGGAAGACAACAGGCAGAAAAAAAGAAGGTGGGGATTGTGGTTCTGGTGATGGTCGCAAGTGCTTGCATTGTGCTACGGACAAGACACCGCAGTGGCGGACTGGGCCCATGGGCCCTAAGACGTTGTGCAATGCTTGTGGTGTGAGGTACAAGTCAGGCCGTCTTGTGCCAGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTGTTAACTAAGCACTCTAACTCACATCGAAAGGTTTTGGAGCTTCGTAGACAAAAGGAGATGATGAGAGCACAACAACACCATCATCAACACCAACAACAGTTCATACAACATCATCATCATCACCAGAACATGATGTTTGATGTACCCACAAACGCTGATGATTACTTGATCCACCAACATGTTGGGCCCGATTTCAGGCAGTTGATTTAG 1137 0.4776 METPSFFQNSFCSQFTSDDGDNNNNNNNTAVSTGDNFIVEDLLDFSNDDGIIANNNGVVATLDSVTGNSGSANSSNTTVVESCNSSSFSFSGCEPSIIADIGSRSLVDGHFSGELCVPYDDLAELEWLSNFVEESFSSEDLQKMQLISGMKRPNDDASSEAHKFRAEPNRKSPIFNSEVSVPAKARSKRSRVPPCNWTSRLLVLSPTPTPTTSSSSEPDVMVPISTPTPVSFTIPVTGKKPGKTTGRKKEGGDCGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQHHHQHQQQFIQHHHHHQNMMFDVPTNADDYLIHQHVGPDFRQLI* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2838 378 MobiDBLite consensus disorder prediction 206 256 - -
Ahy16g2838 378 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355|GO:0043565
Ahy16g2838 378 SMART GATA_3 256 306 IPR000679 GO:0006355|GO:0043565
Ahy16g2838 378 PIRSF Txn_fac_GATA_plant 20 352 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ahy16g2838 378 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 320 - -
Ahy16g2838 378 Gene3D - 255 306 IPR013088 GO:0006355|GO:0008270
Ahy16g2838 378 CDD ZnF_GATA 261 308 IPR000679 GO:0006355|GO:0043565
Ahy16g2838 378 Pfam GATA zinc finger 262 295 IPR000679 GO:0006355|GO:0043565
Ahy16g2838 378 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355|GO:0043565
Ahy16g2838 378 MobiDBLite consensus disorder prediction 206 233 - -
Ahy16g2838 378 PANTHER GATA TRANSCRIPTION FACTOR 1 378 - -
Ahy16g2838 378 PANTHER GATA TRANSCRIPTION FACTOR 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2838 Ahy-Chr16 142009743 142012525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2838 36 378 C2C2-Gata Transcription Factor Family AT5G25830 51.966 4.19e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy16g2838 GATA 3.60E-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2838 - - zju:107420464 439.113