Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2837 ATGAATGCTTCCATTTCGGAGCTTGAAAGCACCTCAAACTCGTTATCATTTTCTTTCTCACCATCACCGCCGCCGCCACAACCACTAAAACAATCGTCTTCAACGAAATTAAAGGGCAAAACGTACTCAAACAACAAGCACCCGGTGTACCGAGGGGTACGGATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGGGAGCCGCGCAAGAAATCGCGCATATGGCTGGGCACATTTCCGACACCAGAGATGGCGGCCAGGGCTCACGACGTGGCCGCACTAAGCATCAAAGGAAATTCCGCCATTCTCAATTTTCCTGACCTTGAAAACTGCCTTCCTCGCCCGGCATCCTTGGCGCCTCGCGACGTCCAGGCTGCCGCGGCGAAGGCAGCTCACATGGACAAGTTTGAGTTATTAATACCTTCTTCGTCCCCGTCCTCGTCCTCGTTGACTTTCGAGCTGACGGAGATTATTGAGCTTCCGAGGCTCGAAACCGGCGACGAGTACCGGAAGGAGTTTGTGTTTGTGGACTCCGAGGATGCATGGATGTATCAACCACCTCCAATGCCGTGGTTGCTGTACGGACAAGAAGAAGAAGAAGATGGTACTTCTTTCCGGAGTTTTTTTTCGGATTACTAA 639 0.5211 MNASISELESTSNSLSFSFSPSPPPPQPLKQSSSTKLKGKTYSNNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPDLENCLPRPASLAPRDVQAAAAKAAHMDKFELLIPSSSPSSSSLTFELTEIIELPRLETGDEYRKEFVFVDSEDAWMYQPPPMPWLLYGQEEEEDGTSFRSFFSDY* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2837 212 MobiDBLite consensus disorder prediction 1 46 - -
Ahy16g2837 212 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Ahy16g2837 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 197 - -
Ahy16g2837 212 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Ahy16g2837 212 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Ahy16g2837 212 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Ahy16g2837 212 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Ahy16g2837 212 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Ahy16g2837 212 MobiDBLite consensus disorder prediction 1 18 - -
Ahy16g2837 212 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Ahy16g2837 212 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Ahy16g2837 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2837 Ahy-Chr16 141986983 141987965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2837 30 201 AP2-EREBP Transcription Factor Family AT5G11590 53.807 2.07e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g2837 AP2 2.10E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2837 K09286 - gmx:100794316 222.631