Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2747 ATGGAATTGGATGTTTGTGCTGGGTATATTCCAAGTGGGATAAAGTTAGACAGCTTCATGGTGAAAAAAGATCCACAGATTTGGAATTGGGAAGCGTATCTCCGATTGGAGAGTGAATCATTCACAATTTTTGTGGATAATTTACCTGGCAATGTTTCGAAGAATGAATTGTTTCATATGTTCAAGTGGATAGGAAGGATAAATGACATCTATTTGGCACGTAAGGAGAAGTATGGTCGGATCCATCTGTTTGCTTTTATCAGGTATACTACAAAAGGAGGTATATTAAAGGCCATCAATGAGATGAATGGAATGCAATTAAGGAGCAAAGAGATATTTGTGGGTGAGGCTAAGTACAGGAGGAGGATTGATGTCCGGAGAAAAACCACTACACACGATGAAGATGTCATGGAGTCTCCTGATGGAAAACAAGAAAAATCAAAGAAAAGAATATTTAGGTGA 462 0.381 MELDVCAGYIPSGIKLDSFMVKKDPQIWNWEAYLRLESESFTIFVDNLPGNVSKNELFHMFKWIGRINDIYLARKEKYGRIHLFAFIRYTTKGGILKAINEMNGMQLRSKEIFVGEAKYRRRIDVRRKTTTHDEDVMESPDGKQEKSKKRIFR* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2747 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Ahy16g2747 153 SMART rrm1_1 42 115 IPR000504 GO:0003723
Ahy16g2747 153 CDD RRM_SF 43 114 - -
Ahy16g2747 153 SUPERFAMILY RNA-binding domain, RBD 35 123 IPR035979 GO:0003676
Ahy16g2747 153 Gene3D - 35 150 IPR012677 -
Ahy16g2747 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Ahy16g2747 153 MobiDBLite consensus disorder prediction 130 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2747 Ahy-Chr16 140314590 140316364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2747 43 130 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 7.82e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2747 K12891 - ahf:112805495 207.608