Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2706 ATGGACTCCATAAATCTGAGCTACGAGCAGAAGCTTAAAGTTGTGGCACGAATCGTAGACGAATACGACGCACGCGTTTGCGACTGGCCGCCCAGTGAGGTAGAGCTTGGGCTTACGGCGACCCTCAAACCCCACCAGGTTGAAGGGGTTTCATGGCTTATATGGAGGTATAAACTCGGGGTCAACGTCGTTCTCGGGGATGAGATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTTCTATGCTATCTAAAAGTGTACCGATTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTAGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGATCTGCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTCCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTACAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTTGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCATGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATGAAGAAAATGAAGCATCTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACACCCCACTGAGATGAATGACAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTTCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACGATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCAAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTTGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCAAAGACAGCATTCTCAGCTGCTCAAAATTCTGATACTATTATCGAAGAGTGCGCTAAGACTCCGGGCTCAGATAACTTCCTCGTGTTGTTTTGCTGA 2559 0.4189 MDSINLSYEQKLKVVARIVDEYDARVCDWPPSEVELGLTATLKPHQVEGVSWLIWRYKLGVNVVLGDEMGLGKTLQAIGFLCYLKVYRLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKEYRRDLRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLSTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNHGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHEENEASGVGISDLKSIIFGLHPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGSLSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSDTIIEECAKTPGSDNFLVLFC* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2706 852 SMART ultradead3 38 238 IPR014001 -
Ahy16g2706 852 Gene3D - 23 287 IPR038718 -
Ahy16g2706 852 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 230 IPR014001 -
Ahy16g2706 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 275 IPR027417 -
Ahy16g2706 852 Pfam SNF2-related domain 58 348 IPR000330 GO:0005524|GO:0140658
Ahy16g2706 852 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 540 IPR001650 -
Ahy16g2706 852 SMART helicmild6 398 493 IPR001650 -
Ahy16g2706 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 537 IPR027417 -
Ahy16g2706 852 Gene3D - 288 601 IPR027417 -
Ahy16g2706 852 Pfam Helicase conserved C-terminal domain 369 493 IPR001650 -
Ahy16g2706 852 MobiDBLite consensus disorder prediction 645 666 - -
Ahy16g2706 852 CDD SF2_C_SNF 367 504 - -
Ahy16g2706 852 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 12 838 - -
Ahy16g2706 852 PANTHER HELICASE CHR10-RELATED 12 838 - -
Ahy16g2706 852 SUPERFAMILY Macro domain-like 705 831 IPR043472 -
Ahy16g2706 852 Gene3D Leucine Aminopeptidase, subunit E, domain 1 701 840 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2706 Ahy-Chr16 139480080 139504005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2706 369 523 RAD5 or RAD16-like Gene Family AT5G22750 34.839 1.56e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy16g2706 SNF2_N 1.70E-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2706 K20092 - gmx:100797182 1168.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2706 16 139480080 139504005 Ahy6g2318 6 106561418 106580676 hybridization