Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2672 ATGGCTTCTAAACTTTACAAAGATGCCTCCAATGGTGATGAGGCAACAACAAAGCCTGTTCACTTCTTCAAGATCCTGCTCCCGAGGACCATTTTAGATGGAAAAATTGTAAGCAAGTCTATTATGATGATTCCTAGAAAGTTTGTAAGGGAATATGGAGAACGCTTGTCCAACAAAGTTGTTCTAAAGCTTCCAAATGGCACAAAATGGGAGGTATATTTGGAGAAACATGATGGAAGAATTTGGTTACAAAATGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTACGGTTTGGGGATCTATTGGTTTTTAGATTTGATGGAACATCTCATTTTAATGTGTTCATATGTGATATGAGTGCCACGGAAATAGACTACCCCTTCAAGAATAAATATGGTAAAAGGGCCAACACTAGTGATGAGGAACTTCTTCCTCGTAAAACCAAGAGAACAAATGCAAACAACAAAGATGGGGGTAAGTTGAAGAATCCAAGGGAAGGAAAGATGTCCAATGACTTGCTTTCTAAAACTAAGCCATCGGGTTTTGGAAAATTTGAAACTACAGAAGTTGCGAAAAATACTTCCTTCACGGTTATGATAAAACCAAACAGAGGATTATATCGCATGTGGTTACCGATGGGGTTCTTAAAGGATTATATCAAACCTGGGAAGCAAACTGTTACATTGTTGGTTGGAGAAAGATCTTCAAAGGTTAGGTTGATCTATTACCAAAAACATTCTACCAGTTGCCTTACAGCAGGTTGGACAAGATTTGCAAGGGAATCTGATTTGGAAATAGGTGATGCATGTTCCTTTGAATTACTAGCTAGCGATTGTGAAGACATAGTCATGAAGGTTTCCATTTTTAAGCACTCCACTACTGAGCCATAA 891 0.385 MASKLYKDASNGDEATTKPVHFFKILLPRTILDGKIVSKSIMMIPRKFVREYGERLSNKVVLKLPNGTKWEVYLEKHDGRIWLQNGWKEFVEHHSLRFGDLLVFRFDGTSHFNVFICDMSATEIDYPFKNKYGKRANTSDEELLPRKTKRTNANNKDGGKLKNPREGKMSNDLLSKTKPSGFGKFETTEVAKNTSFTVMIKPNRGLYRMWLPMGFLKDYIKPGKQTVTLLVGERSSKVRLIYYQKHSTSCLTAGWTRFARESDLEIGDACSFELLASDCEDIVMKVSIFKHSTTEP* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2672 296 MobiDBLite consensus disorder prediction 137 173 - -
Ahy16g2672 296 Pfam B3 DNA binding domain 38 117 IPR003340 GO:0003677
Ahy16g2672 296 Pfam B3 DNA binding domain 196 291 IPR003340 GO:0003677
Ahy16g2672 296 SUPERFAMILY DNA-binding pseudobarrel domain 17 119 IPR015300 -
Ahy16g2672 296 SMART B3_2 195 292 IPR003340 GO:0003677
Ahy16g2672 296 SMART B3_2 22 120 IPR003340 GO:0003677
Ahy16g2672 296 SUPERFAMILY DNA-binding pseudobarrel domain 192 291 IPR015300 -
Ahy16g2672 296 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Ahy16g2672 296 MobiDBLite consensus disorder prediction 137 172 - -
Ahy16g2672 296 CDD B3_DNA 196 290 IPR003340 GO:0003677
Ahy16g2672 296 Gene3D - 14 121 IPR015300 -
Ahy16g2672 296 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 191 290 - -
Ahy16g2672 296 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 16 130 - -
Ahy16g2672 296 CDD B3_DNA 21 118 IPR003340 GO:0003677
Ahy16g2672 296 PANTHER B3 DOMAIN-CONTAINING 191 290 - -
Ahy16g2672 296 PANTHER B3 DOMAIN-CONTAINING 16 130 - -
Ahy16g2672 296 ProSiteProfiles B3 DNA-binding domain profile. 194 292 IPR003340 GO:0003677
Ahy16g2672 296 Gene3D - 183 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2672 Ahy-Chr16 138663655 138666803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2672 27 290 B3 DNA Binding Superfamily AT3G18990 27.353 4.17e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy16g2672 B3 5.20E-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2672 - - aprc:113849508 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2672 16 138663655 138666803 Ahy6g2286 6 105906965 105909509 hybridization