Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2652 ATGGTGATCGTTAATGGTGTTGCTAGCAGAACAAGAAGCAAGAAGAAAGAGAGGTCTTTGAATCCGTCACCGTGTATTGGATCAGGATCCCGAACATTGTCTTCGTCGTCATCAAAGTCCAGCGAGAGAAAGAAGGGGAAAAGAAAGGCTGAAGTTGATGTTGAGGTTGTGGAATTTGACTATGAGGCTTTCCATGAACGATGGATGATGGAACCTCAGCAACCTCTTGAGATGCCTCCGCCAAGAGACGTGATTGAACTCAGCGATGATAGTGATGATAATGCAGCTGCTGAGGGGTTGCAGAAGCTTCATCGTGGGTATGTTAATGAAGAGAAGAAGGAAGAAGTTCAAGAAAGAAACGTGTTTCCTATTGATGGTGCTGGAACTTCTGCCAACGATCCTATAATCGTTGGTTTGAGTGATAGTAGTAGTAGTGATGAAGGAAGTGAGGGCGGTGGAAGAAGTTTGGACTGGGATTTTGGATTATCAAGTGAGTCAGAGGACACTGATAACAGTGATGACGAAGATTTCAGAGTGGAGGATGAGGGAGAAGGTTCAGCTTCAGCATCAGCTTCAGCATCAACTTCAGCTTCAAGCAGTGATGATAGTGGTTCAAGTTCCTTTGATGATGAGGATGAAGAGGAGGAAAAGGAGAAGAGGAGATGTAAGAGGAGGAAGAAGGAGAAGAAGAGAAGAGAGCCAACTTTTGAGTCTCATAGCAATAAAGTTTTGCGCTGCGACGAGGTGATTGTGGAAACTGAATGCTCTGGAATTTGCAAGAAGAATGGTGAGAATAAGAATAATTCATCCTCAACCGAGAATAATGTGTTTGATCATCAGCCAGAGAAAATGCTACCAAAGGATGCAGATTGTGCTAGTGTTCTCTTTGGAGAACGCAATACGGAGGGTTGTTCTTCAGAAAAGAATGAAGATAAGGAAAAGAATGTAGCCAAGAAACCGGTGGAGGTTTGTTCTTCAAAAAAGAATGAAGATAAGGAAGAGAATGTAGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAAGAATGCAGATTGTGCTAGTGTTCTCTTTGGAGATCGCAATACGGAGGGTTGTTCTTCAGAAAAGAATGAAGATAAGGAAGCCAAGAAACCAGCGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTAGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAATAATGAAGATAAGGAAAAGAATGTGGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAGAAGAACGAAGACAAAGGAAAGAAGGTGGCAAAGAAACCAATGCCGGCGGGGAATAGAGCACGGAAGAGAGTGGAAAGAACAGGAGAAAATGTTGGTGCTGATATTGAAGCCTCTTCCCAAAAGCGTTCGCGTCCATCCACACCTGAGGAGAATGATTCAGAAAAGGATGAAAAGAAACCGGTAAAACAGAAGGGTCGTGAAAGTGTGTCTGATTTTGTGGCAAAGGACAAAGGGGACTCGCCAATGATCGATGAAAGAGTGCCGATGAATGATGAAAGAATGGAGAGTGCAGAGGAAGAGAGGGAGAACAAGAAGGAAGGAGAGGCTGAAGGGAAGCATAAGGCCGGGGCGGTTTGCGAAAGTAGTTACAAAGAGAGGGAGCAACATAGAGTGACAACAAATCCATCTAGGCCAAAGGAGGCACCGTTGATTGAACTTCTTGCTGAATGCTTTCGGATTAAGCATAATCCAGATAATGTTCATAAGCAAGATACAATCTCAAAGGAACCAGCTCTCGATGTTCAGAGAAAATTTTTTTTTGGAAAGAAAGTGCCAATTGAAAAAACTGAATCCGAGAAGGAGAGGGATATGTTGTGGGAAGAAATGGATTCTTTGCTCAGACTAGGTGAAGTTGACTCCTTGGTTGGCTGTGTTGAGACTGTCGAAACGCAACAGAACACAGAGGCTCCGGCAACCAATTGTAAGCACAAGTTTGTCCATGATGAAGAGACTGGAATATATTGCATACTCTGCCATTGGATGATCATAGACATAAAAGGCATGCCGGTACCCTTTGTGAGTGAGTATCCAAGAGAAGGATCAAGAAAGAAGCTGCTATCTGATGGGCCTAATGGCTTATGCTTTGATGAGGCTCCATTTGGTGTCCGAGAAGGTGGTTACTGTAACAAGGAAGGCACAGTTTGGGACCTGATTCCAGCAGATACTAAGCAAAACCTGTATGCTCATCAGCTTGAAGGTTTTGAATTCCTTTGGAAAAACTTGGCAGGAACCATGGAGCTTCCTAAATTGAAGAGTTGTGACTCGAACAGCACGGGTGGATGCATCATTTCTCATGCTCCAGGGACTGGAAAGACGCGGCTGACCATCGTGTTCCTTCAGACATACTTGAAAGTGTTTCCAGATTGCCATCCCATGATTATTGCTCCTGCTAGCTTACTGCTAACTTGGGAAGATGAGTTCAGAAAGTGGGACAATGAGATTCCGTTCCATAATTTGAGCAATCAAGACACATCAGGAAAAGAGCACCGAGCTGCATGGAGCAAAGTTGGAGGGTCTGCTCCAAGCCAGGAAGATATCCGGATGGTGAAGCTGTATTCTTGGTTCAAAGAACCAAGTATTCTTGGAATCAGCTACAGTCTATTTCAGAGGCTTACCGGCTTGAAGCGTGATAAAAGCTTGAAGGAGAATGCTGCCAGAGGGGTCATGGGAAAAATCCTTCTTGAAGTTCCTGGATTGTTGGTATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAGAGAATCATCCTTTCCGGGACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAGACCGTCCTTTCCGGATACCATACCTCCTGAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAAAGGTCTCAGTTGGGAACCAGTTTCTTCAGTCAGAACTGAGAATCTAAATGATGAGAACATCAAGCAGTTGAAGCAGCTGATGGATCCATTTGTGCATGTTCACAAAGGCAGTATTCTTCAGAAGAATCTTCCTGGCTTGAAAGACTGCGTGGTGACTTTAATGCCAGGTGATTTGCAGAAAACACTTCTTGAGGGCATTGAAGGACATCCAAATACATTGCCTTTTGATAGCAAGTCGGCCTTGGTGTCTGTCCATCCATCCCTTTTCCTTTGCTGCACTCTTTCACCTAAGGAAAGAGCTCTTGTTGACATGGAACAGTTGAAAGACCTCAAACTGAATCCAACTGTTGGTGTCAAAACAAGATTTTTGGTGGAGTTTGTAAGGATCTGTGATGCAATGAACGAGAAAGTGCTTGTGTTCAGCCAGTTCCTTGATCCTTTGACTTTAATCATGGAGCAATTAAAGTCAATTTTCAATTGGACTGAGAAAAAAGAAGTTTTCTACATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATCCAAACAGCCAAGCAAAGATCTTGCTTGCATCCACAAAAGCTTGCTGTGAAGGAATCAGTCTGGTTGGTGCTTCCAGGGTGGTGCTGCTGGATGTGGTTTGGAACCCCTCGGTCGAAAGGCAAGCTATCAGCCGTGCTTATAGGCTGGGGCAAAAGAAGGTGGTCTACACTTACCATCTCATAACACATGGGACTACCGAGTATACAAAATACTGCCATCAGGCCAAGAAGGACCGGTTGTCTGAACTAGTCTTTTCAGCAAAGAACACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTCGATAACATGGTGCGCCATGGGAAACTGAGGGACTTGTTTGGTGACTGTGTGGTGCAGCCAAAGGACTCTGATTTGATTGATAATTTGGATCCTAAAATTTCCTGA 3972 0.4371 MVIVNGVASRTRSKKKERSLNPSPCIGSGSRTLSSSSSKSSERKKGKRKAEVDVEVVEFDYEAFHERWMMEPQQPLEMPPPRDVIELSDDSDDNAAAEGLQKLHRGYVNEEKKEEVQERNVFPIDGAGTSANDPIIVGLSDSSSSDEGSEGGGRSLDWDFGLSSESEDTDNSDDEDFRVEDEGEGSASASASASTSASSSDDSGSSSFDDEDEEEEKEKRRCKRRKKEKKRREPTFESHSNKVLRCDEVIVETECSGICKKNGENKNNSSSTENNVFDHQPEKMLPKDADCASVLFGERNTEGCSSEKNEDKEKNVAKKPVEVCSSKKNEDKEENVAKKPVEGCSSKKNADCASVLFGDRNTEGCSSEKNEDKEAKKPAEGCSSKKNEDKEKNVAKKPVEGCSSKNNEDKEKNVAKKPVEGCSSKKNEDKGKKVAKKPMPAGNRARKRVERTGENVGADIEASSQKRSRPSTPEENDSEKDEKKPVKQKGRESVSDFVAKDKGDSPMIDERVPMNDERMESAEEERENKKEGEAEGKHKAGAVCESSYKEREQHRVTTNPSRPKEAPLIELLAECFRIKHNPDNVHKQDTISKEPALDVQRKFFFGKKVPIEKTESEKERDMLWEEMDSLLRLGEVDSLVGCVETVETQQNTEAPATNCKHKFVHDEETGIYCILCHWMIIDIKGMPVPFVSEYPREGSRKKLLSDGPNGLCFDEAPFGVREGGYCNKEGTVWDLIPADTKQNLYAHQLEGFEFLWKNLAGTMELPKLKSCDSNSTGGCIISHAPGTGKTRLTIVFLQTYLKVFPDCHPMIIAPASLLLTWEDEFRKWDNEIPFHNLSNQDTSGKEHRAAWSKVGGSAPSQEDIRMVKLYSWFKEPSILGISYSLFQRLTGLKRDKSLKENAARGVMGKILLEVPGLLVLDEGHTPRNQSSQIWKVLSEIQTHKRIILSGTPFQNNFLELYNTICVVRPSFPDTIPPELKKFCQRRLMQEKKESKGLSWEPVSSVRTENLNDENIKQLKQLMDPFVHVHKGSILQKNLPGLKDCVVTLMPGDLQKTLLEGIEGHPNTLPFDSKSALVSVHPSLFLCCTLSPKERALVDMEQLKDLKLNPTVGVKTRFLVEFVRICDAMNEKVLVFSQFLDPLTLIMEQLKSIFNWTEKKEVFYMSGKLDKNQRQLLIHSFNDPNSQAKILLASTKACCEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKDRLSELVFSAKNTEQDEPKSSAVEFEDEILDNMVRHGKLRDLFGDCVVQPKDSDLIDNLDPKIS* 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2652 1323 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 269 1316 - -
Ahy16g2652 1323 Gene3D - 1045 1308 IPR027417 -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 187 204 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 163 181 - -
Ahy16g2652 1323 CDD DEXHc_ATRX-like 744 975 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 259 286 - -
Ahy16g2652 1323 Coils Coil 212 233 - -
Ahy16g2652 1323 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 269 1316 IPR044567 GO:0080188
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 1 51 - -
Ahy16g2652 1323 Gene3D - 726 1025 IPR038718 -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 23 37 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 358 563 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 83 120 - -
Ahy16g2652 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 730 1025 IPR027417 -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 135 150 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 468 559 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 260 278 - -
Ahy16g2652 1323 CDD SF2_C_SNF 1110 1243 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 303 345 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 70 243 - -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 364 436 - -
Ahy16g2652 1323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1117 1273 IPR001650 -
Ahy16g2652 1323 MobiDBLite consensus disorder prediction 301 346 - -
Ahy16g2652 1323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 770 970 IPR014001 -
Ahy16g2652 1323 Pfam SNF2-related domain 765 1048 IPR000330 GO:0005524|GO:0140658
Ahy16g2652 1323 SMART ultradead3 740 982 IPR014001 -
Ahy16g2652 1323 SMART helicmild6 1143 1232 IPR001650 -
Ahy16g2652 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 1273 IPR027417 -
Ahy16g2652 1323 Pfam Helicase conserved C-terminal domain 1122 1232 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2652 Ahy-Chr16 138285191 138290366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2652 1130 1262 RAD5 or RAD16-like Gene Family AT5G43530 38.346 1.36e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy16g2652 SNF2_N 5.10E-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2652 K10875 - aip:107627890 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2652 16 138285191 138290366 Ahy6g2269 6 105554302 105559407 hybridization