Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2604 ATGGCGTCGTCAAGCTATTCGAATTCACCCTGCGCTGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCGGATTGCATCTTCGCGCCGTACTTCCCACCGGAAGAGCCTCAAAAGTTCGCGAACGTTCACAAGATATTTGGGGCAAGCAACGTGAGCAAGCTTCTGAATGAGGTGCAACCCCATCAGAGGGAGGACGCCGTGAACTCTCTGGCGTACGAGGCGGAGGCGCGAATCAAGGATCCGGTCTACGGCTGCGTTGGGGCCATTTCAGTGCTCCAGCGGCAGGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAATGCAGATTTGATCCGCTACACCTGTAATGAGATGACAACTTTGCAAGATGGGAGAAGAATTGGTGAAGCTTCTTCCACTTTTTCTCAATCTCCTACTGCTTATTATTATCCATCTCCTTGGAACAATGATCCTTGTGCTGGGGATGCTGCCTTTCACAGAGGAGGTGGTAACCATATGTGA 501 0.507 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMTTLQDGRRIGEASSTFSQSPTAYYYPSPWNNDPCAGDAAFHRGGGNHM* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2604 166 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Ahy16g2604 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
Ahy16g2604 166 Coils Coil 89 109 - -
Ahy16g2604 166 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Ahy16g2604 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2604 Ahy-Chr16 137087724 137089642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2604 4 126 AS2 family AT3G27650 78.571 7.39e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy16g2604 LOB 9.30E-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2604 - - var:108328620 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2604 16 137087724 137089642 Ahy16g2604 16 137087724 137089642 ECH
Ahy16g2604 16 137087724 137089642 Ahy6g2236 6 104878215 104880223 hybridization