Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2541 ATGGTTAGTGAAGACCAAAAACGAAGCCCCAGAAACCAGAAGTACCCTGCAACTGAGGGAAATGGCCAAAGCCAAAACCTTAACGATGCCGTTTTCAGTCCGCGATTCAAATCTGCGGCAGCTATGGCCGGCTGGGACGAAGAGGCACTGCTTCTCGCAAGCCTCGTCGTTGAAGACACACCCGATAGAGATTTCAAACACAAGAAGCGCTCTGTCTTGAACTCCAAGACTCCACCCACCAATTCAAGAAGAGCACAGAGTTCTCCAGAATCGATACGAGTGGCTGTTCTTGATCTTGACGAAGAAGACACTCCAAGAAAAGACAGTAAAGAAAAGACTAAAGAAAAGAAGGCCACTGTAAACGAAGAGAGTAAAGAAGGAGGGAAGGAATCCACTAAGGAGAAATCCGGTGTTGCTGCACTTCCCTGCATTGATAAGCTCAGAGACGAGCTTTCTTGCGCGATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACCCCTTGTGGTCACAGCTTTTGTAAAAAGTGCCTTCGATCTGCTGCAGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAATTAATAGGCAATGGAAGATCATGCACTGTGAACACTGTTCTCTGGAATACAATACAGCTCCTGTTTCCCCAAGAAGTTGAGGCAAGGAAAGCGGCCGGCGCCATAAATAGCCGGCAACAATCTAAGTGCCTGAGCCCAGAAGCAGCATTTTACAACAATCTAAGGAATGATGAAAGCACAACAACCAGAGTTGGTGTGAGTACAAGGAGAAGCGGCGGTAGGGCTGCCGCAATAACTGATCAGGAAGCAAGGCGTCTCCAAGGTGTGAGATCAAGAAGAGGGATTACTCCTGCTACACAAACTGAGGATGCAGCAATTGCCCTGAGGCTGCAGAGAGAGGAGTTTATGCATGCCTTTAGGGGAACACAGGAACAACACCATTCCAGCAGATCCTCATCTGTGGATTTAGCTAGAGAAAATTTGAGGGCAATGGCATCTAGAGCCATGACTCTTCGCATTAGAGATCGAAGATTTTGA 1056 0.4725 MVSEDQKRSPRNQKYPATEGNGQSQNLNDAVFSPRFKSAAAMAGWDEEALLLASLVVEDTPDRDFKHKKRSVLNSKTPPTNSRRAQSSPESIRVAVLDLDEEDTPRKDSKEKTKEKKATVNEESKEGGKESTKEKSGVAALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLIGNGRSCTVNTVLWNTIQLLFPQEVEARKAAGAINSRQQSKCLSPEAAFYNNLRNDESTTTRVGVSTRRSGGRAAAITDQEARRLQGVRSRRGITPATQTEDAAIALRLQREEFMHAFRGTQEQHHSSRSSSVDLARENLRAMASRAMTLRIRDRRF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2541 351 MobiDBLite consensus disorder prediction 74 89 - -
Ahy16g2541 351 SMART ring_2 153 191 IPR001841 -
Ahy16g2541 351 PANTHER - 26 232 - -
Ahy16g2541 351 PANTHER UNCHARACTERIZED 253 349 - -
Ahy16g2541 351 MobiDBLite consensus disorder prediction 95 133 - -
Ahy16g2541 351 PANTHER UNCHARACTERIZED 26 232 - -
Ahy16g2541 351 MobiDBLite consensus disorder prediction 60 133 - -
Ahy16g2541 351 Pfam Zinc finger, C3HC4 type (RING finger) 153 191 IPR018957 GO:0046872
Ahy16g2541 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 222 IPR013083 -
Ahy16g2541 351 ProSiteProfiles Zinc finger RING-type profile. 153 192 IPR001841 -
Ahy16g2541 351 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Ahy16g2541 351 SUPERFAMILY RING/U-box 145 216 - -
Ahy16g2541 351 MobiDBLite consensus disorder prediction 13 29 - -
Ahy16g2541 351 PANTHER - 253 349 - -
Ahy16g2541 351 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2541 Ahy-Chr16 135387193 135389008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2541 72 195 C2H2 Transcription Factor Family AT5G39550 30.400 6.64e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2541 - - gmx:102666585 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2541 16 135387193 135389008 Ahy16g2541 16 135387193 135389008 ECH
Ahy16g2541 16 135387193 135389008 Ahy6g2182 6 103682865 103684690 hybridization