LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g2531	ATGGGAAGAAGTTGTTCTTCCATATCACTCTTCCTTGCCTTGAAGTTATTACTACTACTAGTAGCATGGTCATCAAAAAGGGGACACTGCTTAACTACCCCACGACCAAGGACCACTAATAAGAGCATAGGTGCAGTGCTTGATCTGGATTCACTAATGGGTAAGCAGCAGAAGATAGCCATGAAAATTGCCATCAGAGATTTCAACAGATTCAGTAGAACTAAACTCCAGTTGGAGGTGGGAAATTCCCGCGGGAATTCGGCTCAAACAGTTGTTAACGCCATGGATCTTGCACAGAAGAAGCAGTTGCTAGCCATCATAGGAACAATAACACACAGCGAAGCATATTTGGCAACTGAAATTAATAACGCCACAAAAAACACCCCTATATTATCTCTATCTTCGTTTGCACCCATCACAGAGTTACCCTCTTCTCCATTGCCACAACTAATCCAACTCGGAGATGATATCAACATTCAGATGCAATGCCTTGCAGCCATTGTAGGACACTTCAAGTGGAAAAAAGTGACAACAATATATGAAGTTAATAGTGGGTTTTCTTATGATCCAGGGGTACTAATTTCCCTCTCCAATTCTCTTCGCCATGTTGGATCTGAGATCGTTAACCAGTTAGCATTGCCTTCCTTGTCTTTGCAATCTAGAATCGAAAATGAGCTTAACCAACTCAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGTTGGCTAGCGTGCTTTGCAAGAAAGCAAAACAAATGGGTTTGATGGAGAAAGGATATGTATGGATCATCCCGAACGAGGTTGCTGCCCTTCTTGATTCGGTTAACTCTTCAGTTATCTCTACCATGCAAGGTGTTATTGGATTCAAAACACATTTTTTGGAAAGTACCAAACCATATACAAAGTTCGGGTTCAGATTTCGAACAAGGTTTGCACTAGAGTACCCTGAAGAAGAAGAGAACAATACTCCAAGTGTTTTCGCACTTCGAGCTTATGATGCAGCTTTTGCTATTGCTAATGCTAAGGTTACAAACAAGTCACAAGGAAAGTTCAACATGAAAGAATTCCTTGATGAAAATTTACATCAATCTTCAACCTTCACCATAATTAATGTGATAGGAAAAAGCTATAGAGAAATGGCATTTTGGTCTCCAACACATGGTTTTTCCAAGAACTTTGTTGAACATGAGAAAATGGAGGTAAATAAATTTAACGGTTATGATGGAGTTGTTTTGAGTAATATTTATTGGCCTGGAGATTTACACTCAGTTCCAAGGGGATGGACAAATAGTAATGAGGAAATGCCACTTAAAATAGGAGTACCTGCAAATGATGCTTTTGCTCAGTTTGTGAATGTCACCTATGGTGACAGCAAGCATGCAACTTCCATAACTGGTTTTTCAATCAATGTCTTCAAAGCAGCTATTAAGAATCTTCCATATCACTTGCACTATGATTTTGTTCCCTTCAATGGCTCCTATGATGAAATGGTTAATCAAGTTAACAATAAGACATTAGATGCTGCAGTTGGAGATATATCAATATTGGCATATAGATATCATTTAGTTGAGTTCTCACAACCATATGTTGACTCTGGACTTAACATGGTGGTCGTTGAGAAGCCAAATAAATCAAAACAAACATGGATGTTTATGGATGCATTCACAAAAGAGATGTGGTTGATGATGGCAGCAGTGCACGTTTTGGTTGGATTTGTCATTTGGTTGATTGAACGCGAAGAAAATGAAGAACTACAAGGTCTGGGGGCGATGCTTTGGTTTTTAGTCACCGTAATATTCCTTGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACCGTGTTGGCACCATGGTTATTTGTTATCCTAATTGTAACCAGTAGCTTCACAGCGAGTCTAACATCGATGATGACTGTATCGCAACTCGAACCATCAGTGGTTGATATTCAGACCCTTCAGAAGAGAAATGCTCCAGTTGGTTGTGATGAGAATTCATTTATTGTGAGGTATTTGATTGACATACTAAAATTCAAACCTGAGAACATTAGAAGAATAAATTCCATTAATGGTTACCCTGCAGCATTTAAGAATAATGAGATTGAAGCAGCTTTCTTTGTCGCCCCTCATGCCAAAGTCTTTCTCGCAAAGTACTCATGTGAAGGCTTCGTCCAAGCAGGGAGCACCTTTAGGCTTGGTGGCTTTGGTTTTGTGGGTTCCTAA	2235	0.3964	MGRSCSSISLFLALKLLLLLVAWSSKRGHCLTTPRPRTTNKSIGAVLDLDSLMGKQQKIAMKIAIRDFNRFSRTKLQLEVGNSRGNSAQTVVNAMDLAQKKQLLAIIGTITHSEAYLATEINNATKNTPILSLSSFAPITELPSSPLPQLIQLGDDINIQMQCLAAIVGHFKWKKVTTIYEVNSGFSYDPGVLISLSNSLRHVGSEIVNQLALPSLSLQSRIENELNQLKKKSNRVFLIVHSSLELASVLCKKAKQMGLMEKGYVWIIPNEVAALLDSVNSSVISTMQGVIGFKTHFLESTKPYTKFGFRFRTRFALEYPEEEENNTPSVFALRAYDAAFAIANAKVTNKSQGKFNMKEFLDENLHQSSTFTIINVIGKSYREMAFWSPTHGFSKNFVEHEKMEVNKFNGYDGVVLSNIYWPGDLHSVPRGWTNSNEEMPLKIGVPANDAFAQFVNVTYGDSKHATSITGFSINVFKAAIKNLPYHLHYDFVPFNGSYDEMVNQVNNKTLDAAVGDISILAYRYHLVEFSQPYVDSGLNMVVVEKPNKSKQTWMFMDAFTKEMWLMMAAVHVLVGFVIWLIEREENEELQGLGAMLWFLVTVIFLAHREPIRRPLARTVLAPWLFVILIVTSSFTASLTSMMTVSQLEPSVVDIQTLQKRNAPVGCDENSFIVRYLIDILKFKPENIRRINSINGYPAAFKNNEIEAAFFVAPHAKVFLAKYSCEGFVQAGSTFRLGGFGFVGS*	745

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g2531	744	Pfam	Receptor family ligand binding region	58	345	IPR001828	-
	Ahy16g2531	744	Pfam	Ligand-gated ion channel	561	668	IPR001320	GO:0015276\|GO:0016020
	Ahy16g2531	744	Gene3D	-	553	678	-	-
	Ahy16g2531	744	Gene3D	-	156	327	-	-
	Ahy16g2531	744	CDD	PBP1_GABAb_receptor_plant	42	397	IPR044440	-
	Ahy16g2531	744	Pfam	Bacterial extracellular solute-binding proteins, family 3	465	729	IPR001638	-
	Ahy16g2531	744	PANTHER	GLUTAMATE RECEPTOR	39	741	-	-
	Ahy16g2531	744	SUPERFAMILY	Periplasmic binding protein-like I	43	432	IPR028082	-
	Ahy16g2531	744	Gene3D	-	335	443	-	-
	Ahy16g2531	744	Gene3D	-	460	535	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g2531	Ahy-Chr16	135089943	135099224	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g2531	89	741	Ion Channels	AT5G11210	32.168	2.46e-104	337

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g2531	-		-	aip:107605043	1443.33

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g2531	16	135089943	135099224	Ahy6g2169	6	103375257	103379783	hybridization

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