Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2486 ATGACGTCGCCATTTGGTTTTTTCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAGGAGGCTGATTTGCAACTTTATCTAACTCACATGAGAGATAAAACAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACATGCTGGACTACTGATCCTCAACAACCACAATCACATGATCCAGTGTTAGGAGCCATTGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTTCTTCAAAACGGTTCATCACACATGCAATTGCATTTTCCTGATGCTGTTATACCAAATGTCTTGATTCATCAGATGATGCCAGATGTTATATCCTACGCGGAAGCCATAATTCAAACTCGTCGTTCCGGATTCCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTATTGTTTGTTGATGACTACGACGACATTATCACCGACTTCATCATTGAAGAGTCCATGGAAAATACTAATATTAAGATGGTTCCTACTTCCAAGAATGCCATTGATTCTCTCGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATTACGGTGATGATGCAGAACAAGTTTTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCACTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCCGATGCCAACAGATTAG 759 0.3953 MTSPFGFFWEVSSPSLLQEQEADLQLYLTHMRDKTADYFILKVRVRHQTCWTTDPQQPQSHDPVLGAIDTFACHSSILMQAQEFLQNGSSHMQLHFPDAVIPNVLIHQMMPDVISYAEAIIQTRRSGFLYERPDFRLFSLNLDIIIQNSLLFVDDYDDIITDFIIEESMENTNIKMVPTSKNAIDSLEEVKLEKNNNATERCSICLSEFDYGDDAEQVLSMPCKHVYHQECIIHWLKTSHLCPLCRYPMPTD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2486 252 Pfam Ring finger domain 201 246 IPR001841 -
Ahy16g2486 252 SMART ring_2 202 245 IPR001841 -
Ahy16g2486 252 PANTHER F6A14.12 PROTEIN-RELATED 96 251 - -
Ahy16g2486 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 251 - -
Ahy16g2486 252 SMART ringv_2 201 246 IPR011016 GO:0008270
Ahy16g2486 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 251 IPR013083 -
Ahy16g2486 252 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Ahy16g2486 252 SUPERFAMILY RING/U-box 184 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2486 Ahy-Chr16 134043211 134043969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2486 165 250 C3H Transcription Factor Family AT1G18760 40.230 4.14e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2486 - - adu:110276959 390.193