Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2485 ATGACGTCGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCGCATTGTTCCAAGAATCGGAGGCAGATTTGGAACTTTATCTAACACTCATCGGAGATAAAATAGCAGATTACTTCATTCTGAAGGTACGAGTTAGGCATCAAACGTGCTGGACTACTCATCATCAACAACCACAATCACATTATCCAGTGTTAGGAGCCATTGATACGTTTGAATGTGACAGCTCAATTCTAATGCATGCTCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCATTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATGATGCCAGATGTCATATCCTACGCGGAAGCCACAATTCAAACTCGTCGTTCCGGATTTCTCTACGAAAGACCTTATTTTCGTTTCTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTTGTGTTTGTTGATGATGACTACGGCGACATTATCACCGACTTCATCGTTGAAGAGTCCATGGGAGATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTAACTGAATTTGATTACGGTGATGATGCAGAACAAGTATTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCACTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCCGATGCCAACAAATTAG 762 0.399 MTSPFGFSWEVSSPALFQESEADLELYLTLIGDKIADYFILKVRVRHQTCWTTHHQQPQSHYPVLGAIDTFECDSSILMHAQEFLQNGSSHMQLHFPDDVIPNVLIHHMMPDVISYAEATIQTRRSGFLYERPYFRFFSLNLDIIIQNSFVFVDDDYGDIITDFIVEESMGDTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLTEFDYGDDAEQVLSMPCKHVYHQECIIHWLKTSHLCPLCRYPMPTN* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2485 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 252 - -
Ahy16g2485 253 SMART ring_2 203 246 IPR001841 -
Ahy16g2485 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 252 IPR013083 -
Ahy16g2485 253 ProSiteProfiles Zinc finger RING-type profile. 203 247 IPR001841 -
Ahy16g2485 253 SUPERFAMILY RING/U-box 185 251 - -
Ahy16g2485 253 Pfam Ring finger domain 202 247 IPR001841 -
Ahy16g2485 253 PANTHER F6A14.12 PROTEIN-RELATED 101 252 - -
Ahy16g2485 253 SMART ringv_2 202 247 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2485 Ahy-Chr16 134022179 134023092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2485 166 251 C3H Transcription Factor Family AT1G18760 40.230 1.01e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2485 - - adu:110276959 392.889