Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2406 ATGCCTCCGATCCAAGAAACCGACCCGATACAAGATACAACCATCGCCGACCACCAGAAGAAAACCAACAACAAGAGGATGGCCAAGGACGCCGGTGGCGGCGGCGGCGGCTCTGCCGCGGGACCAATGAGGTACCGCGGCGTCAGGCGGAGGCCGTGGGGGTGTTACGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCTGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCTGCTTGCGCCTACGACTGTGCTGCCAGAGCGATGCGAGGCGCGAAGGCGAGGATGAACTTCATGTATCCTGATTCTCCTCCTCATCCTCATCCACACCATCACCATCATAATTTTCGTCACTCTGAACTGTTCCAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAGCGGCCGCCATGGCGTAACTGCTCCATTATCGACTCAGCAGCAGCACCGAAACATCACTAACAATTCTCATCATTCCCTGAACATGCTTCTATTCCGCGAGTTTCTGAATTCAAATCTATGTTTGGTTTCTTCTTCTTCTGCTGCTACTGGTGGTGTTGGTTCTAGTGGTGCTAATAATAGTCCTTATCAGTACTGCATCAAGGAAGGTGGTTCCGCTTGCTGCTTCAACGGTAACTGTTGCGGTGGTGGTTCCAACAACGGCACGACGGAGGTTATTGCTGAAGGTGTTGAGGAAGAAGATCAGTCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAGACTTTGGCCTGTTGGAAGAGATAGTTCAACGCTTCTTGCCGAAATCCAAAATCGTTCCAAACAAGAATTGCGACAGCTCTTTGAAGCTGAAACCCGAGGCCGCGGCAATTTCGTTTCCTCATCATCAACAACAACAACAGGGCTATGATGATAACAGCAGGATGATGAGGGGTTTCGATTAG 945 0.5228 MPPIQETDPIQDTTIADHQKKTNNKRMAKDAGGGGGGSAAGPMRYRGVRRRPWGCYAAEIRDPQSKERLWLGTFDTAEEAACAYDCAARAMRGAKARMNFMYPDSPPHPHPHHHHHNFRHSELFQAFNFPKQQCHVSKLVQSGRHGVTAPLSTQQQHRNITNNSHHSLNMLLFREFLNSNLCLVSSSSAATGGVGSSGANNSPYQYCIKEGGSACCFNGNCCGGGSNNGTTEVIAEGVEEEDQSLLELFPRESSDFGLLEEIVQRFLPKSKIVPNKNCDSSLKLKPEAAAISFPHHQQQQQGYDDNSRMMRGFD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2406 314 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Ahy16g2406 314 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Ahy16g2406 314 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Ahy16g2406 314 MobiDBLite consensus disorder prediction 294 314 - -
Ahy16g2406 314 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Ahy16g2406 314 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Ahy16g2406 314 MobiDBLite consensus disorder prediction 13 27 - -
Ahy16g2406 314 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Ahy16g2406 314 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 290 - -
Ahy16g2406 314 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Ahy16g2406 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 13 290 - -
Ahy16g2406 314 MobiDBLite consensus disorder prediction 1 45 - -
Ahy16g2406 314 CDD AP2 44 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2406 Ahy-Chr16 131304393 131305337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2406 23 271 AP2-EREBP Transcription Factor Family AT1G12980 37.751 8.99e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g2406 AP2 8.70E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2406 - - ahf:112736058 520.39