Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2393 ATGATGATGGATCAGGGACAAGGAAGAGAAAACTTGCTTCTTCAGAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGACGCTCATGACCTTCTTCCCTCTTCTGTCACCGTTCAAGGGAACAACACCAACACCAACAGGATCATAACTACTACCATTCTCCATAACGGGTCATCATCGGAACCGGGTCGGATCCTCCATCATCATGATATTCAGTACCAGCAGGAGCAGGAGCAGGAGCAGGAGGTTGGGCTTGTTGCCACCTTTGGGAACGTGCATAGGAAGAGGAGAATGGCTAGGATGAGGAGGAGGTCCTCACCAACACTGATGCACCTTCAGTTCCACGCGAACACCACCACCCCCACTACTACTCTTTTTCCACCTCTTTCTTCTTCAAGGCAATCTTCTGATACACCACCACCACCACCACCGACACTTTCTCCTCCTCCTCCTCTTCTTCTTCCTTCTGCTGCTGTTGCTCCTTCCACTACTACTAATACCTCCCCTCACGTGCCTACTCATAATCCCGCACGTGTAATTGATCATACAAACTTGAGATTCCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGTTCTCTCAGGAGGATGGTGTTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCTCCTCTTGAATCAAAGGAAGGAATTCTTATCAGCATGGATGACCTAGATGGCATTCATGTTTGGAGTTTTAAGTACAGATTTTGGCCCAACAATAATAGTCGCATGTACGTCCTTGAAAATACTGGAGAATTTGTTAACGCACATGCTCTTCGAATGGGAGATTCTATTATGGTTTACCAAGATAGTCAAAATCATAATTATGTCATTCAAGCAAAGAAAGCTTCTGATCAAGATGAATTTATGGAGGAAACTAGCGACATGGCAAATGATATCTTCCTTAATGATTACGAAGTTAGCAAACCTGGTTGTTTCACCTTGACTTACCCAGCTTTGAATGACACTGCAGGCATGTCATTCATATATGAGACTACATTCTCAAATGATAGTCCTCTTGACTTTTTGGGCGGATCAATGACTAATTTTTCAAGGATCGGACCAACTGAGACCTTTGGTTCTGTTGAAAATTTGTCACTTGATGACTTCTACTAA 1137 0.4424 MMMDQGQGRENLLLQKTEACAFVAGVDAHDLLPSSVTVQGNNTNTNRIITTTILHNGSSSEPGRILHHHDIQYQQEQEQEQEVGLVATFGNVHRKRRMARMRRRSSPTLMHLQFHANTTTPTTTLFPPLSSSRQSSDTPPPPPPTLSPPPPLLLPSAAVAPSTTTNTSPHVPTHNPARVIDHTNLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPPLESKEGILISMDDLDGIHVWSFKYRFWPNNNSRMYVLENTGEFVNAHALRMGDSIMVYQDSQNHNYVIQAKKASDQDEFMEETSDMANDIFLNDYEVSKPGCFTLTYPALNDTAGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPTETFGSVENLSLDDFY* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2393 378 MobiDBLite consensus disorder prediction 134 156 - -
Ahy16g2393 378 CDD B3_DNA 187 289 IPR003340 GO:0003677
Ahy16g2393 378 Pfam B3 DNA binding domain 189 286 IPR003340 GO:0003677
Ahy16g2393 378 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 378 IPR044800 GO:0003700
Ahy16g2393 378 MobiDBLite consensus disorder prediction 158 173 - -
Ahy16g2393 378 MobiDBLite consensus disorder prediction 94 177 - -
Ahy16g2393 378 Gene3D - 185 304 IPR015300 -
Ahy16g2393 378 MobiDBLite consensus disorder prediction 110 133 - -
Ahy16g2393 378 SMART B3_2 189 291 IPR003340 GO:0003677
Ahy16g2393 378 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 44 378 - -
Ahy16g2393 378 ProSiteProfiles B3 DNA-binding domain profile. 189 291 IPR003340 GO:0003677
Ahy16g2393 378 SUPERFAMILY DNA-binding pseudobarrel domain 187 286 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2393 Ahy-Chr16 130687850 130692654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2393 170 378 B3 DNA Binding Superfamily AT3G26790 56.612 2.12e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy16g2393 B3 2.40E-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2393 - - adu:107494712 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2393 16 130687850 130692654 Ahy16g2393 16 130687850 130692654 ECH
Ahy16g2393 16 130687850 130692654 Ahy6g2050 6 99734580 99739443 hybridization