Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2389 ATGGCGAGCAGGTACTGGGTGGTGTCTCTTCCCGTTCACAACTCCGCTTCCACTCTCTGGAACCAGCTCCAGGATCAAATCTCCAAGCACTCTTTCGACACCCCTCTCTACAGGTTCAACATCCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGATGATCTCGCTAAGTCCAACACTTTCATGGAAGGAGTGTCGCACAAGATCCGGCGCCAGATTGAGGAACTTGAGAGGATCTCCGGCGTCGAGAGCAGCGGTCTCACTGTCGATGGTGTCCCTGTTGATTCCTATTTAACCAGATTTGTTTGGGATGAAGCAAAGTACCCCACTATGTCGCCATTGAAAGAGATCGTTGATGGAATTCATGGTCAAGTAGCAAAGATAGAGGATGATCTCAAGGTTCGTGTTTCTGAGTACAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCCTAGCTGTCCGTGACCTTTCCAACTTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACTCTCCTTGCCATTGTTTCCAAGTATTCACAAAAGGATTGGCTCGCAAGCTACGAAACACTGACAAACTATGTGGTCCCCAGATCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTTTACACTGTAACACTCTTCAATCGTGTTGCGGACAACTTCAGAACTAGTGCACGTGAAAAAGGGTTTCAAATTCGTGATTTTGAATACAGTCCAGAAACACACGAGGGGCGAAAGCAGGAGTTAGATAAATTGATGCGGGATCAGGAAAGTTTGAGAGGTTCTTTGTTGCAGTGGTGCTATACCAGCTATGGAGAGGTTTTCAGCTCGTGGATGCATTTCTGTGCTGTACGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTACCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCTGTAAAAGCTGAAAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGATAGCACAAACAGTTCATACTGGAAGTCTGAGGATGATGTAGGGATGGCGGCCCTAGCGGGTGAGGATGCCCACCCCTACGTGTCCTTCACAATCAATCTTGTTTGA 1122 0.459 MASRYWVVSLPVHNSASTLWNQLQDQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNTFMEGVSHKIRRQIEELERISGVESSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLASYETLTNYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHEGRKQELDKLMRDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSTNSSYWKSEDDVGMAALAGEDAHPYVSFTINLV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2389 373 Gene3D - 41 312 - -
Ahy16g2389 373 CDD V-ATPase_C 5 370 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ahy16g2389 373 Pfam V-ATPase subunit C 5 366 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ahy16g2389 373 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ahy16g2389 373 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 372 - -
Ahy16g2389 373 Gene3D - 163 251 - -
Ahy16g2389 373 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Ahy16g2389 373 SUPERFAMILY Vacuolar ATP synthase subunit C 2 372 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2389 Ahy-Chr16 130591917 130596522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2389 1 372 Primary Pumps ATPases(2) AT1G12840 83.957 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2389 K02148 - gmx:100803728 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2389 16 130591917 130596522 Ahy16g2389 16 130591917 130596522 ECH
Ahy16g2389 16 130591917 130596522 Ahy6g2048 6 99602074 99606688 hybridization