Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2378 ATGGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTTACTAATCAAATGCCGAGATCCAATAACGAGCCCTGTCTACTCATTCTGACTGATCCAAGGACTGATCATCAGACAGTTACAACATATATTGGGTATACAACTGATTTTGAACATGAGGTTGCTGTCTTCCAAGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCAATTGAAAACCCGCAGGATATCATTGTTCAGTCTACTAGGCCATATGGTCAGAGAGTTGTCCTTAAGTTTGCACAATACACTGGTGTGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAATGAAACATCCTATAACGAGCCTCGTCTACTCATTCTGA 417 0.4197 MGANAIAGRHTPGTFTNQMPRSNNEPCLLILTDPRTDHQTVTTYIGYTTDFEHEVAVFQGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSTRPYGQRVVLKFAQYTGVNAIAGRHTPGTFTNQMKHPITSLVYSF* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2378 138 PANTHER 40S RIBOSOMAL PROTEIN SA 60 128 IPR005707 GO:0003735|GO:0006412|GO:0015935
Ahy16g2378 138 Gene3D - 1 46 - -
Ahy16g2378 138 Gene3D - 47 134 - -
Ahy16g2378 138 SUPERFAMILY Ribosomal protein S2 2 42 IPR023591 -
Ahy16g2378 138 MobiDBLite consensus disorder prediction 1 21 - -
Ahy16g2378 138 PANTHER 40S RIBOSOMAL PROTEIN SA 2 41 - -
Ahy16g2378 138 PANTHER 40S RIBOSOMAL PROTEIN SA 60 128 - -
Ahy16g2378 138 Pfam Ribosomal protein S2 59 126 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy16g2378 138 PANTHER 40S RIBOSOMAL PROTEIN SA 2 41 IPR005707 GO:0003735|GO:0006412|GO:0015935
Ahy16g2378 138 SUPERFAMILY Ribosomal protein S2 59 129 IPR023591 -
Ahy16g2378 138 PRINTS Ribosomal protein S2 signature 109 126 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy16g2378 138 PRINTS Ribosomal protein S2 signature 60 69 IPR001865 GO:0003735|GO:0005840|GO:0006412
Ahy16g2378 138 CDD RPS2 60 126 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2378 Ahy-Chr16 130245103 130250090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2378 2 41 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 80.000 1.31e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2378 K02998 - aip:107647299 162.925