Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2370 ATGTCCATCTTGCCCTCACAAGCCCAGCCAGCACCATCGTCTTCTTCATCTCCTTCAACTTCAAACCCTAATTCCCAATATGGATTCCCAAATTCTCTTCCCTCTTCCTCAATTTCCTCTCTCTCTTCGCAATTCAACAACTACGACAGCAACATCGATGCATCTTTCGGATCCCTTCGAATCTCTGATCCCCAATCTCCCTGCCACCATCCAGGTTCATCAACTCAAGCTACAGAAGATTATCGTGGACCTTCCGAAAAGGTGATGGAGTCGGTGTCTGCAAGTGGTATAAGTTCTTCTTCACCTTCACAAAACTCTGGAATACATTCTAGGAGTCACGCTGGAAAACGATCAGGTGGATCATCCCACTCATCAGGGAAGACAGCAGGAATGCTTTCCTCTCATAGACATCAACAGAATCCTGTGTCTGCAAATTATCCTGGAAGTTCCCCTCCACTGGGAAGGAGATCTCAGATGGTGAATGGCAATTACTTGCTGAATTTTCAGTATGATCCAATATCCCGTTCTCAACCAAGAGGGCCTCCACCTCCTCTTCCAAGAAGGCAACGGAAGAGAAGGCCATACAACAAGGATTTGTTTCTGCAGGCAAATTACAGATTCATGGTCCTAGATACAGGAAATTATTCTCCCCAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAGGATATTATATGTGTGACATATTCAACCCCCTTCCCAGTTCAGTGCCCAATTTGTTTGGAGTATCCTCTGTGTCCCCAGATAACCTCATGCGGGCATATTTTTTGTTTCCCATGTATACTACAGTACTTGATGCTGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGATATCTGTCAAGGATTTGTATACTGTCCACATAACAAATGTCAAACAATATCAAGTAGGGGATAATATTGAGTTCACATTTTTAACACGAAAAAAGGATTCATTTACTTTATCTCATAAAAATAAACAAGAGACAGATATTGCATCAAGTAGCGATGGAGATTTATGTGATCCGTTTTCCAAGTTCACACTCACATCAGATGTAGATCTCTCTGTTAGACACGCAATATCAGATCTAGATGGCTGGCTGGCCAGAGCTGATTCAGGGCTTGTCGATGACCTGGAGAAGCTTCCATATGTTTGTGCTGCAATGCAACAACTAAAACAAAGGAAGAAATATTGGAATGAACATAGGGCTTCTGACATTTCTTCAAGGCTTATTGATTCTGAACATCAGATACAATTGACAGCTGCAAATGCTGTGGATGCTGATGGTGAAACCCATTCTAATGGATCAAGGATTTCCACTGTAGATTTCCAGGACCAAAGTAAGGGAATAATATTGGATAAGTCAACTGCTGAAGCCTGTCCACATCAAACTTTGGAAGGAGAGAAATTGATAGAACAAGAAATCAATCCATCCTCATCATATGAGGAGAAGAATGGTGTTCAAAGGCATTCAAATGGAATTGGAGAGACGAAGGAAAGTGATTCTTACAATTTCTTCCAGGCTGTGGATGGCCAGCATATAATTCTCCATCCACTGAACACGAAATGTTTACTTCATCATTATGGGAGTTATGACATGCTTCCACACAGAATAACGGGAAAGATTCTGCAAATGGAAACGGTTACCCAGTCCGAGGCCATGAGGAGGCGATATAAATTCTTAAGTCATTTTCCGTTGACAACAACTTTTCAGCTTTGTGAAATTGATTTGAGTGAGATGTTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAAGCGCGCACACCAGAGGAAACAACTCGCAAAGAAGGAGCAAAAGGAAAAATTCAAGGCGGAAGCTGCTGCCGCTTATTCTTTTCCCATTCCAAGTTATAAACTTGCTTCGTATGATGACACTCCAACATTTTCTATGGATGACTTTGAAGCCTTGGGAAATTCAGCTATGTCATCAAGTCCTCCAGTTGTTGGGGAAAGAAAAACATTCTCAAATGTTACCCGGCTTGGATTCGCTGCTGCTCATGATTCTCCATCCTTACAAATCCAAGAAACCAGCAGTACCCATAATAATAATACGGTCACTAGTCCTACTGGCACAACAGGTCCGAGAAATGTGGAGACACCATCATATTCCAATGTTACATCCAGAGCCGAATCAAATGTAAACATGAATGCACCAAACACAAATGACTTTGGGAAGAAGCGGAAAAAGCAAAATCGAGTTCTCCTATCGACATCTGGTGGCAGGCGTTACTGA 2289 0.4233 MSILPSQAQPAPSSSSSPSTSNPNSQYGFPNSLPSSSISSLSSQFNNYDSNIDASFGSLRISDPQSPCHHPGSSTQATEDYRGPSEKVMESVSASGISSSSPSQNSGIHSRSHAGKRSGGSSHSSGKTAGMLSSHRHQQNPVSANYPGSSPPLGRRSQMVNGNYLLNFQYDPISRSQPRGPPPPLPRRQRKRRPYNKDLFLQANYRFMVLDTGNYSPQSMDPDKMLQWEDIICVTYSTPFPVQCPICLEYPLCPQITSCGHIFCFPCILQYLMLGEEDHKGDCWKRCPLCFVMISVKDLYTVHITNVKQYQVGDNIEFTFLTRKKDSFTLSHKNKQETDIASSSDGDLCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLKQRKKYWNEHRASDISSRLIDSEHQIQLTAANAVDADGETHSNGSRISTVDFQDQSKGIILDKSTAEACPHQTLEGEKLIEQEINPSSSYEEKNGVQRHSNGIGETKESDSYNFFQAVDGQHIILHPLNTKCLLHHYGSYDMLPHRITGKILQMETVTQSEAMRRRYKFLSHFPLTTTFQLCEIDLSEMLPPEALAPFMDEIKKRAHQRKQLAKKEQKEKFKAEAAAAYSFPIPSYKLASYDDTPTFSMDDFEALGNSAMSSSPPVVGERKTFSNVTRLGFAAAHDSPSLQIQETSSTHNNNTVTSPTGTTGPRNVETPSYSNVTSRAESNVNMNAPNTNDFGKKRKKQNRVLLSTSGGRRY* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2370 762 MobiDBLite consensus disorder prediction 91 158 - -
Ahy16g2370 762 ProSitePatterns Zinc finger RING-type signature. 259 268 IPR017907 -
Ahy16g2370 762 MobiDBLite consensus disorder prediction 1 158 - -
Ahy16g2370 762 SUPERFAMILY RING/U-box 243 297 - -
Ahy16g2370 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 340 IPR013083 -
Ahy16g2370 762 CDD RING-HC_RNF10 244 291 - -
Ahy16g2370 762 Pfam Zinc finger, C3HC4 type (RING finger) 244 290 IPR018957 GO:0046872
Ahy16g2370 762 MobiDBLite consensus disorder prediction 688 740 - -
Ahy16g2370 762 PANTHER RING FINGER 10 FAMILY MEMBER 99 759 IPR039739 -
Ahy16g2370 762 ProSiteProfiles Zinc finger RING-type profile. 244 290 IPR001841 -
Ahy16g2370 762 SMART ring_2 244 290 IPR001841 -
Ahy16g2370 762 MobiDBLite consensus disorder prediction 171 193 - -
Ahy16g2370 762 Coils Coil 599 619 - -
Ahy16g2370 762 MobiDBLite consensus disorder prediction 1 81 - -
Ahy16g2370 762 MobiDBLite consensus disorder prediction 685 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2370 Ahy-Chr16 130086288 130094531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2370 152 712 C3H Transcription Factor Family AT3G26730 58.333 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2370 - - adu:107494651 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2370 16 130086288 130094531 Ahy16g2370 16 130086288 130094531 ECH
Ahy16g2370 16 130086288 130094531 Ahy6g2033 6 99196291 99204340 hybridization