Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2352 TATAGGTATCATCAAATCAAAGAGAAGAAGGTAAGTGAGGAAGCTAATAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTTCCTTCTGATTCTACATCAGAAGAGAAAAGAAGAGAAGAAGAAGATGATTGTTTTCCCAACAACTTTCCTCTTCAGCCACCTTCACAATCTGAAATCCAAAAACAAGAAGAGGAAGAACCTTCACCAAATCTTCAAATAGTTCAGCTCCAAGACCAAGGCAAGAAGGATGTGAGGAAACGACATTATAGAGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCCGAAATCAGAGACCCTAAAAAGGCGGCAAGAGTTTGGTTAGGAACCTTTGACACTGCAGAAGCCGCAGCAGCAGCGTACGATTCTGCTGCCTTAAAATTCAAAGGTAACAAAGCCAAACTCAATTTTCCTGAGCGCGTTGCTGCTTCCAATTCGGCTTCAACAACTTATCATCACTCTTCACAACCACCACCTACTATGGTGTATCGACCTTCTTCACAACCTTATACTCCATTAATGCCGCCGCCGCCGCCGTCCTCCTCCGCATCGGAGGAAGGAGGATTTCCAAACCTAATGCAATATGCGCAGTTGCTTTGGAGTAGAGACGATGATGATCTACAACGTGCAGCTTCAGGGCTTTATCATCAGAATAATAATAATAATAATAATTACAGTAACAATTTTTCTTCATATGGTTCTGTAATGAATTCATCATCAGGGTTGTCTTCTTCTTCTTCTACTACTTCAGATTCTGCGGTTGTGATGACTGGTCAACCCCATAGCATGATGGGTGCACCACCACGACCACCCAAGGGAGATTATGATTATTATTTTGGTCAAGGGACTGGTTTTGATGGCAGGAATTGA 891 0.4343 YRYHQIKEKKVSEEANKVDRRHGKRPLPSDSTSEEKRREEEDDCFPNNFPLQPPSQSEIQKQEEEEPSPNLQIVQLQDQGKKDVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDSAALKFKGNKAKLNFPERVAASNSASTTYHHSSQPPPTMVYRPSSQPYTPLMPPPPPSSSASEEGGFPNLMQYAQLLWSRDDDDLQRAASGLYHQNNNNNNNYSNNFSSYGSVMNSSSGLSSSSSTTSDSAVVMTGQPHSMMGAPPRPPKGDYDYYFGQGTGFDGRN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2352 296 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Ahy16g2352 296 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Ahy16g2352 296 Pfam AP2 domain 88 137 IPR001471 GO:0003700|GO:0006355
Ahy16g2352 296 MobiDBLite consensus disorder prediction 153 168 - -
Ahy16g2352 296 MobiDBLite consensus disorder prediction 153 195 - -
Ahy16g2352 296 MobiDBLite consensus disorder prediction 1 45 - -
Ahy16g2352 296 MobiDBLite consensus disorder prediction 243 264 - -
Ahy16g2352 296 MobiDBLite consensus disorder prediction 243 296 - -
Ahy16g2352 296 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 79 261 - -
Ahy16g2352 296 PANTHER DNA-BINDING DOMAIN 79 261 IPR044808 GO:0003700|GO:0009873
Ahy16g2352 296 SMART rav1_2 88 151 IPR001471 GO:0003700|GO:0006355
Ahy16g2352 296 MobiDBLite consensus disorder prediction 1 90 - -
Ahy16g2352 296 CDD AP2 88 146 IPR001471 GO:0003700|GO:0006355
Ahy16g2352 296 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Ahy16g2352 296 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Ahy16g2352 296 SUPERFAMILY DNA-binding domain 88 146 IPR016177 GO:0003677
Ahy16g2352 296 MobiDBLite consensus disorder prediction 169 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2352 Ahy-Chr16 129566496 129568914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2352 69 165 AP2-EREBP Transcription Factor Family AT5G61890 72.449 3.94e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g2352 AP2 2.90E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2352 - - ahf:112754987 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2352 16 129566496 129568914 Ahy18g2896 18 133703750 133706115 ECH
Ahy16g2352 16 129566496 129568914 Ahy16g2352 16 129566496 129568914 ECH
Ahy16g2352 16 129566496 129568914 Ahy6g2020 6 98737106 98739381 hybridization