Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2332 ATGGTTCTGCAGAACGATATTGATTTGCTTAATCCTCCGGCTGAGCTTGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCTTTCTTCATGGATGTGAAATGCCAAGGTTGCTTCAACATTACCACTGTATTCAGCCATTCTCAGACCGTAGTGGTGTGTGGAAACTGCCAAACGATCTTGTGCCAGCCCACTGGTGGAAGAGCAAGGCTAACCGAGGGCTGCTCCTTTAGGAAGAAGGGAGACTAA 261 0.4751 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGRARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2332 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Ahy16g2332 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Ahy16g2332 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Ahy16g2332 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Ahy16g2332 86 Gene3D - 5 85 IPR023407 -
Ahy16g2332 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Ahy16g2332 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2332 Ahy-Chr16 128887415 128888434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2332 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.512 5.01e-60 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2332 K02978 - gmx:100499804 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2332 16 128887415 128888434 Ahy16g2332 16 128887415 128888434 ECH
Ahy16g2332 16 128887415 128888434 Ahy6g2005 6 98243761 98244824 hybridization