Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2329 ATGAATACTTTTACGTCGTCATCGTCGCAGTCGCCAAGGTCAAAAAAGAAGCAAACTAAGCCGGCGGCGCAGCCGCAAGAGCAGCAGCAACACGAGACAGCATGGGGAGGAAGGTACCTCGGGGTGAGGAGGAGACCATGGGGGAGGTATGCGGCTGAGATTCGCGACCCTTCTACTAAGGAAAGGCATTGGTTAGGCACGTTTGACACTGCAGAAGAAGCTGCCCTGGCATATGACAGGGCAGCTCGCTCCATGCGTGGCTCACGTGCCCGAACCAACTTCGTCTACCCGGACACTCCTCCAGGCCTATCGGTCACCCCAATCTTGTCACCCGACCAACTCCAACCCCAAACTTATAACCACCACAACCATGTCCATGACTTGTCCTCAATCTTCACCTCTAACTCGATCTCAACTAGTCAGCAGCTCGACTCAAATCCAACTCTAGACCCAGTTACGTTGTTGGTTGGCGCCAACAACAACTGGAGCTATGATAATACCTACGGCTATAGCGGCGGCGATCACCAAAACAGTAGCAACGATGGTTACTACAACAGTACTAGCTATCCCGACCAAGGTTGTCCGAATTTGGGGCACGTTTTTGTTGAAGAGGGTGGAACTAGCAATAGCAATAGCAATAGTAGTGCTTCCACAGTTGAGCTACCTCCATTGCCACCTGATATCACAAGCTCCATTGGTTATAATAATATGGATAATCATGATCATGGTTTTGATTATTATCACAATATGACTTCTGGGGATTATGTTCAAAGTCCAATGTTCAATGCAATGCCAACGGTTTCGGAGAATGTGGCTGGAGCTGAGGGTTTTGAATTGGGGGGCTCCTCTTATTTCTTCTGA 861 0.4925 MNTFTSSSSQSPRSKKKQTKPAAQPQEQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGLSVTPILSPDQLQPQTYNHHNHVHDLSSIFTSNSISTSQQLDSNPTLDPVTLLVGANNNWSYDNTYGYSGGDHQNSSNDGYYNSTSYPDQGCPNLGHVFVEEGGTSNSNSNSSASTVELPPLPPDITSSIGYNNMDNHDHGFDYYHNMTSGDYVQSPMFNAMPTVSENVAGAEGFELGGSSYFF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2329 286 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Ahy16g2329 286 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Ahy16g2329 286 MobiDBLite consensus disorder prediction 203 220 - -
Ahy16g2329 286 MobiDBLite consensus disorder prediction 1 37 - -
Ahy16g2329 286 MobiDBLite consensus disorder prediction 1 33 - -
Ahy16g2329 286 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Ahy16g2329 286 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Ahy16g2329 286 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Ahy16g2329 286 MobiDBLite consensus disorder prediction 200 224 - -
Ahy16g2329 286 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 286 - -
Ahy16g2329 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 4 286 - -
Ahy16g2329 286 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Ahy16g2329 286 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Ahy16g2329 286 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2329 Ahy-Chr16 128674991 128676446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2329 26 282 AP2-EREBP Transcription Factor Family AT5G13910 43.462 4.92e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g2329 AP2 1.90E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2329 K09286 - gmx:100809600 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2329 16 128674991 128676446 Ahy16g2329 16 128674991 128676446 ECH
Ahy16g2329 16 128674991 128676446 Ahy6g2003 6 98121807 98123231 hybridization