LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g2290	ATGGTTCGTGCTATAAAGGCTGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCATGTTGGGGATAGCTTCAAGCTCCATAACAAGATTTCTTGACATTCAGCACCTCCATTACAATGGCTTCCCTTACCCTTCATTCCTTGTCACAACTTTCCTTGTTTTCGTACTTGTCTTTGTGTTCACCATCATTGGCAATGCCTTGGGTGGTGCCAGCTTCAATCCCACTGGCACTGCTGCGTTCTATGCTATTGGTCTCGGCTCTGACTCACTCTTCTCCATGGCTCTGCGCTTCCCTGCCCAGGCTCTTGGTGCTGCTGGTGGAGCTTTGGCAATTATGGAGATAATTCCTTCGAAATACAAACACATGATGGGAGGCCCTTCATTGAAAGTGGATCTGCACACCGGTGCTGTTGTTGAGGGAGTGTTGACTTTTGTGATCACTTTTGCTGTGCTCTACATAATCCTCAAGGGCCCTCGTAGTGACTTGCTCAAGACTTGGTTGCTCGCCATGTCGACCGTCGCACTAGTCATGGTTGGATCGGCTTACACCGGTCCATCCATGAATCCTGCCAATGCGTTTGGTTGGGCATACCTAAATAACTGGCACAACACATGGGATCAATTCTATGTATACTGGATCTGCCCCTTCGTCGGAGCAATATTTGCCGCATGGTTTTTCCGCGCCATCTTCCCCCCACCAGAAGCTACACAGGAGAAGAAACAGAAGAAAGCATGA	750	0.488	MVRAIKAAIGDGVLTFMWVFCSSMLGIASSSITRFLDIQHLHYNGFPYPSFLVTTFLVFVLVFVFTIIGNALGGASFNPTGTAAFYAIGLGSDSLFSMALRFPAQALGAAGGALAIMEIIPSKYKHMMGGPSLKVDLHTGAVVEGVLTFVITFAVLYIILKGPRSDLLKTWLLAMSTVALVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFVGAIFAAWFFRAIFPPPEATQEKKQKKA*	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g2290	249	PRINTS	Major intrinsic protein family signature	58	82	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	PRINTS	Major intrinsic protein family signature	143	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	PRINTS	Major intrinsic protein family signature	6	25	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	Pfam	Major intrinsic protein	4	230	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy16g2290	249	Gene3D	Glycerol uptake facilitator protein.	2	248	IPR023271	-
	Ahy16g2290	249	PANTHER	AQUAPORIN SIP1-1	3	246	-	-
	Ahy16g2290	249	SUPERFAMILY	Aquaporin-like	4	244	IPR023271	-
	Ahy16g2290	249	PANTHER	AQUAPORIN SIP1-1	3	246	IPR044222	GO:0015250

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g2290	Ahy-Chr16	126780459	126783734	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g2290	4	249	Major Intrinsic Protein MIP	AT5G18290	55.466	1.96e-82	245

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g2290	K09875		-	gmx:100792787	405.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g2290	16	126780459	126783734	Ahy16g2290	16	126780459	126783734	ECH
	Ahy16g2290	16	126780459	126783734	Ahy6g1962	6	95557842	95561883	hybridization