Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2279 ATGAGTGCAGGTGGCGCATTTGGTGGCAATAGAGGGCTCCGTCCAGTGCCTCCTGAAAATTTTCAGGCTTTGATCTTTTCCATATTTTCATGGCAACCAAAGCGCCACTTGGTTACAACTGAATGGAGTATATTTGTCAGTGGAAAGAGGCTCTTTGCTAGAGACTCTGTTTTATTTATACGGCTAGCTAACAGGCAACTAGCCAACATATCATCCTCGGTATTGTCAAGTGATAGTATGCATATTGGGATTCTTGCGGCAGCTGCTCATGCTTTTGCAAATAATAGTCCCTTTACCGTCTTTTACAATCCTAGGGATAGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTACTACAAGTAA 363 0.4242 MSAGGAFGGNRGLRPVPPENFQALIFSIFSWQPKRHLVTTEWSIFVSGKRLFARDSVLFIRLANRQLANISSSVLSSDSMHIGILAAAAHAFANNSPFTVFYNPRDSPSEFVIPLAKYYK* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2279 120 Pfam Auxin response factor 88 120 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy16g2279 120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 120 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy16g2279 120 PANTHER AUXIN RESPONSE FACTOR 19 28 120 - -
Ahy16g2279 120 SUPERFAMILY DNA-binding pseudobarrel domain 28 91 IPR015300 -
Ahy16g2279 120 Gene3D - 20 71 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2279 Ahy-Chr16 126001106 126005471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2279 28 120 B3 DNA Binding Superfamily AT1G30330 67.308 8.98e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2279 - - aip:107604936 239.58