Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2276 ATGAACATGGAGGGTGAGTTCCAGAAAGAGCAACAAGTGCTGCTTGTTGCTGACCCTGCTTCTTGCTCAAAGCTTTCTACTTCTTCAACCACCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGGGTTGGAATGGTTATCAGTGTTTGTTGAAGAATGCTTTTCAAACCCACCAAGCTATATATTGGGACCTTCAAAGAGTGTTGAGGCCACAACCACCACCACCATAACTACCTGCTCCTCCAACAAGAACCCTTCTTCAACCGCACTACTGAAGCAAAACAACAACAATGATTCCTCACTACAAAACTTTTCAGTCCCTAGTAAGGCTAGAAGCAAAAGAAAGAGGCTCTCAGCAGTTACCAACAGACGAAGAACCAAAACTCCTTTCAGCATTTGGTCACACCAAAATGACGAGCCCTTGATTTCAGACCCTCCTCTGTTAAAACAAACTTATTGGTTAGCGGATAGTGAACTCTTTGTTTTGCCAAAGCAGCAGAAGAAGGATAGTGAGAAAGATGTAATAGCCAAAGACGGCGACGACGACGACAAAGACGGCGGTGGCGAAAAGGGGGCGGTGGTGATGAAGAGGGGAAGTCTTGTGAGTCTTGAAGAGTGCTCTGAGGCAGAGGAAGATGGTGATGGTGGGAATAACAATAATAATAATAATAACAATAATGGTGAGAATCCAATGCCAAGAAGGTGCACACATTGTTTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACGCTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTACCTGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTAAGTTACTTGCACTCCAATTCTCACAAGAAAGTTATGGAGATGAGGATGGCTGGCTCTGTTCTCCATTCTTAG 930 0.4538 MNMEGEFQKEQQVLLVADPASCSKLSTSSTTLDDLFSAQNTEVDVGLEWLSVFVEECFSNPPSYILGPSKSVEATTTTTITTCSSNKNPSSTALLKQNNNNDSSLQNFSVPSKARSKRKRLSAVTNRRRTKTPFSIWSHQNDEPLISDPPLLKQTYWLADSELFVLPKQQKKDSEKDVIAKDGDDDDKDGGGEKGAVVMKRGSLVSLEECSEAEEDGDGGNNNNNNNNNNGENPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAGSVLHS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2276 309 MobiDBLite consensus disorder prediction 217 233 - -
Ahy16g2276 309 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
Ahy16g2276 309 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Ahy16g2276 309 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Ahy16g2276 309 PANTHER GATA TRANSCRIPTION FACTOR 21 303 - -
Ahy16g2276 309 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 21 303 - -
Ahy16g2276 309 MobiDBLite consensus disorder prediction 169 233 - -
Ahy16g2276 309 ProSiteProfiles GATA-type zinc finger domain profile. 237 269 IPR000679 GO:0006355|GO:0043565
Ahy16g2276 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Ahy16g2276 309 Gene3D - 228 300 IPR013088 GO:0006355|GO:0008270
Ahy16g2276 309 MobiDBLite consensus disorder prediction 83 112 - -
Ahy16g2276 309 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Ahy16g2276 309 MobiDBLite consensus disorder prediction 83 127 - -
Ahy16g2276 309 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2276 Ahy-Chr16 125861192 125862798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2276 16 301 C2C2-Gata Transcription Factor Family AT4G32890 36.770 1.30e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy16g2276 GATA 1.40E-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2276 - - adu:107494524 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2276 16 125861192 125862798 Ahy16g2276 16 125861192 125862798 ECH
Ahy16g2276 16 125861192 125862798 Ahy6g1944 6 94867191 94868868 hybridization