Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2266 ATGGCAATTGCACGCACTGGAGTCTACGTGGATGACTATTTGGAGTATGCTAGCACTTTGCCCGCTGAGCTTCAGAGGCTTCTCAATACTGTGCGAGAACTTGATGAACGATCCCAATCTATGATAAACCAGACTAGGCAGCAAACAAAGGTGTGTATGGGGATCTCATCACATGGCTCTAAGAAGGGTAACCATGTCAGTGGCCATCATTATAATAACAATCATCATGCAAATGAGGAAGACGAGGCTGCGATTGAGAAATTGCGAAAGGAAATCGAGGCCAATCAGGATAATGCATTGAACCTATGTACTGAGAAAGTTTTGTTGGCACGGCAAGCATATGACTTGATAGATAGTCATGTCAAACGTCTTGATGAGGATTTAAACAACTTTGCCGAAGATCTGAAGCAAGAGGGGAAAATACCACCGGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTCCCTAAACCTGAAAAACGCAAGCCCTTATATGTAACACCACAGTCAAAGAGGCTTGATTACAGGGATAGAGACTGGGATCGGGAGCATGATAGAGACTTTGAGCTAATGCCTCCACCAGGTAGCCATAAGAAGGAGTATGTAACTCCTATGGAGATGGATACACCTATTGATCCAAATGAGCCAACATACTGTGTTTGTCATCAGGTGTCTTTTGGTGACATGATTGCTTGTGACAATGAAAATTGCCAAGGAGGAGAATGGTTCCACTATTCATGTGTCGGCTTAACTCAAGAGACAAGGTTCAAGGGTAAATGGTATTGTCCAACTTGCAGATTACTACCACAATGCCAATGA 819 0.4359 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKVCMGISSHGSKKGNHVSGHHYNNNHHANEEDEAAIEKLRKEIEANQDNALNLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKPEKRKPLYVTPQSKRLDYRDRDWDREHDRDFELMPPPGSHKKEYVTPMEMDTPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2266 272 PANTHER PHD FINGER PROTEIN ING2 2 268 - -
Ahy16g2266 272 SUPERFAMILY FYVE/PHD zinc finger 193 267 IPR011011 -
Ahy16g2266 272 ProSiteProfiles Zinc finger PHD-type profile. 216 268 IPR019787 -
Ahy16g2266 272 PANTHER INHIBITOR OF GROWTH PROTEIN 2 268 IPR028651 -
Ahy16g2266 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 267 IPR013083 -
Ahy16g2266 272 Coils Coil 24 44 - -
Ahy16g2266 272 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 131 IPR024610 -
Ahy16g2266 272 Gene3D - 5 129 - -
Ahy16g2266 272 Coils Coil 78 105 - -
Ahy16g2266 272 SMART ING_2 9 131 IPR024610 -
Ahy16g2266 272 SMART PHD_3 218 266 IPR001965 -
Ahy16g2266 272 CDD PHD_ING 218 265 - -
Ahy16g2266 272 CDD ING_plant 17 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2266 Ahy-Chr16 125397843 125402808 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy16g2266 ING 2.40E-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2266 K11346 - gmx:100787916 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2266 16 125397843 125402808 Ahy6g1936 6 94627141 94635473 hybridization