Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2241 ATGGAAATTCATTTCCAGCAACCAAATCTTGAGCATAATAACAAAAGTAACAAGAAGAATCCAGGAATTGGGATCAGCAAAGGAAACAAATTCAAAGGAAGAAGCAAAACCAACAACAACAACACTGGAAACAAATTTGTTGGAGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCAGAGATCAAGGACACAACACAAAAGATAAGAATGTGGCTCGGAACATTCGAGACGGCTGAAGAGGCGGCCAGAGCCTACGACGAAGCCGCCTGCCTCCTCCGCGGATCAAACACTCGGACTAACTTTATCACTCATGTCTCCACGGATTCTCCCCTGGCTTCACGCATCAGGAACCTTCTCAACGACAAAAAAGGCATCAAAAAACAAGAAAACAGTGTTGTTGCTTGCGCCCCAAGAATCCTTGGCAGTTCTAGCTCAAGTTCAACAAACAATGATAAAATTGAGAAGTCTGTTCCACAAGTAGTGCGTGATGATGCTTATAAACCGGACTTGAGCAGCTGCGAGATGAATCCACAACAAAGTAATAGTTTCTGGTGGGATTTCGGACCCATCTTCGACCGCCTTCCGTTTGCTAATCATTTACTTGACGGCACAACTGACATGGAGCTTCTGGAATTTGAAAGAATGAAGGTTGAAAGACAAATTTCAGCTTCACTTTATGCCATTAATGGAGTTCACGAGTACATGGAAACTCTTCAGGAATCTAATAACGAACCTATTTGGGATCTTCCACCTTTGTGCTCCTTATTCTGCTAA 774 0.438 MEIHFQQPNLEHNNKSNKKNPGIGISKGNKFKGRSKTNNNNTGNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSTDSPLASRIRNLLNDKKGIKKQENSVVACAPRILGSSSSSSTNNDKIEKSVPQVVRDDAYKPDLSSCEMNPQQSNSFWWDFGPIFDRLPFANHLLDGTTDMELLEFERMKVERQISASLYAINGVHEYMETLQESNNEPIWDLPPLCSLFC* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2241 257 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Ahy16g2241 257 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Ahy16g2241 257 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Ahy16g2241 257 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 242 - -
Ahy16g2241 257 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Ahy16g2241 257 CDD AP2 46 101 IPR001471 GO:0003700|GO:0006355
Ahy16g2241 257 MobiDBLite consensus disorder prediction 1 23 - -
Ahy16g2241 257 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Ahy16g2241 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 26 242 - -
Ahy16g2241 257 MobiDBLite consensus disorder prediction 1 50 - -
Ahy16g2241 257 MobiDBLite consensus disorder prediction 31 48 - -
Ahy16g2241 257 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Ahy16g2241 257 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2241 Ahy-Chr16 124395182 124396230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2241 30 257 AP2-EREBP Transcription Factor Family AT5G19790 46.640 3.25e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy16g2241 AP2 5.50E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2241 K09286 - gmx:100796898 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2241 16 124395182 124396230 Ahy16g2241 16 124395182 124396230 ECH
Ahy16g2241 16 124395182 124396230 Ahy6g1912 6 93714829 93715934 hybridization
Ahy16g2241 16 124395182 124396230 Ahy20g3041 20 141128721 141129698 PCT
Ahy16g2241 16 124395182 124396230 Ahy10g2478 10 114359107 114360118 PCT
Ahy20g3041 20 141128721 141129698 Ahy16g2241 16 124395182 124396230 PCT
Ahy10g2478 10 114359107 114360118 Ahy16g2241 16 124395182 124396230 PCT