Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2002 ATGTCAAACAACAACGTCTCTTCTTCCCCAGCAAACCAGCCTGAGAAGAAGGGTAAAGAGAAAGTTAATTTTGATGAAATGAACAAGGACAAGGGGATCCTAGTCAACGAATCAAACGTTCCAAACAACATGAACAACAAGCGCAAAGCAATCGTGTTAGGAGATGATCATGATAATCCTAATACCGATGGTTCTGCTGCTGTTACTGAAGATGGAAGTGATTCCACTAAAGAACAGGAACCCAACTCTGACAAAACTATCGTTATTGGTAGCCAGAATTCGCAAAAGAAGAAAATTTGGTACAACTGCACCTTTTGTGACAAGAGCTTTTCTTCCGCACAAGCTCTTGGGGGTCACCAAAATGGTCACAGAATGGAGAGAATGCAACGGTCCCATAACAATAATAACAGTGGAAATGATGGGATCCAACTCTTAAATAACATGACCATGGGTGTGGGTATGAACTCATCATCGTCAACAAGCTCCATGGAGCTACCGTCTTCGCCAACCATCCCTTCTTTTAGGCCCTTCTTTAATGGGGAACCTAATATGATGATCATGGGATACAATATTAATAATGATTATCATCCTTATCATCATGGTTTATTCCAGAACAATGGAGGGAGACCATCAAACTTTTTCAGTCCTGGCCCTGTGGTTGGTGCAAATAACAATTTTACATACCCTCGTGTTGGTTCTGCTTTTGGTGCAGTGGGAGTTGGAAACGTTGGTGCATTTCAGCATCCATATGAATTTCGAACAAGAGTAGGCCTCAATGATGCTGCATCAGTGAACCCTGGACCTGGTGGTACATCTCAGCATCCTCGTCCTCCTGTGGCTGCTGTTGAGATTAGAGGAGCTAGAATTGGGAATATCAACAATAATAATAACGGTGGTGTCCAAAGGCAGATTGTGAATGAGGCCTGTGAGACCCCACAGGGTGAATTTGAGTTTGTTTTGCTTCCATGTGCAGCAAGAAACAACGATATGGTGGAGATTGACTTTGGTCTGGTTCCAAAGAAAGACGAAAATTGA 1035 0.4271 MSNNNVSSSPANQPEKKGKEKVNFDEMNKDKGILVNESNVPNNMNNKRKAIVLGDDHDNPNTDGSAAVTEDGSDSTKEQEPNSDKTIVIGSQNSQKKKIWYNCTFCDKSFSSAQALGGHQNGHRMERMQRSHNNNNSGNDGIQLLNNMTMGVGMNSSSSTSSMELPSSPTIPSFRPFFNGEPNMMIMGYNINNDYHPYHHGLFQNNGGRPSNFFSPGPVVGANNNFTYPRVGSAFGAVGVGNVGAFQHPYEFRTRVGLNDAASVNPGPGGTSQHPRPPVAAVEIRGARIGNINNNNNGGVQRQIVNEACETPQGEFEFVLLPCAARNNDMVEIDFGLVPKKDEN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2002 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Ahy16g2002 344 Gene3D Classic Zinc Finger 76 151 - -
Ahy16g2002 344 PANTHER ZINC FINGER PROTEIN 2 83 161 - -
Ahy16g2002 344 MobiDBLite consensus disorder prediction 1 84 - -
Ahy16g2002 344 MobiDBLite consensus disorder prediction 14 32 - -
Ahy16g2002 344 PANTHER ZINC FINGER PROTEIN JAGGED 83 161 IPR045320 GO:0003700
Ahy16g2002 344 SUPERFAMILY beta-beta-alpha zinc fingers 99 128 IPR036236 -
Ahy16g2002 344 Pfam C2H2-type zinc finger 101 124 - -
Ahy16g2002 344 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2002 Ahy-Chr16 109866464 109868262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2002 90 127 C2H2 Transcription Factor Family AT5G01860 52.632 9.97e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g2002 zf-C2H2_6 1.50E-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2002 - - adu:107494137 612.838