Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1990 ATGGGGAGAGGGAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTAACTCTATGATTTCTCCAGTACCAGCTGCTCAAGACTCAGAAAAAGGCAAGGGTTGGAAGCGATTTGAGTTTGACAAGGATGAGCCTCTTGAAGATGAGGAAATTGAAGTGGCTGAAGATGATGCTTCCTTGGTCAAGCAAATTGGCCAGAGTTTTCGGTATTCTAAAATAGAGGAAAGAAGGGAGGAACAAATCCAAGCTGCTCATGACGAAGCCATGTTTGGTGCTTCAGCACTTCCACCTCCTACCAGTACTGACAGTGAGCCTGAAAGGGAGAATGAGAAAGAAGTTGATAAAAAAGCTATTGTTACAAGCCTCTTAAGTGAAACGCAATCCTCTTCAAGCTTCTCTTTGAAAATTGGAAAGACTGCCATCTCGTTCAACAAGGATGGATAG 549 0.4499 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTNSMISPVPAAQDSEKGKGWKRFEFDKDEPLEDEEIEVAEDDASLVKQIGQSFRYSKIEERREEQIQAAHDEAMFGASALPPPTSTDSEPERENEKEVDKKAIVTSLLSETQSSSSFSLKIGKTAISFNKDG* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1990 182 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Ahy16g1990 182 CDD MADS_MEF2_like 2 52 IPR033896 GO:0000977|GO:0045944
Ahy16g1990 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Ahy16g1990 182 SUPERFAMILY SRF-like 1 58 IPR036879 GO:0003677|GO:0046983
Ahy16g1990 182 PANTHER SERINE/ARGININE-RELATED PROTEIN 53 60 162 IPR034604 GO:0000380|GO:0000398
Ahy16g1990 182 MobiDBLite consensus disorder prediction 123 151 - -
Ahy16g1990 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy16g1990 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy16g1990 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy16g1990 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy16g1990 182 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1990 Ahy-Chr16 107764453 107769232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1990 1 54 MADS-box Gene Family AT2G14210 87.037 5.31e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy16g1990 SRF-TF 3.70E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1990 - - ahf:112754627 326.25