Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1922 ATGAAATTAAATAGTAAGTCCCCTCCTCGACCCCCTCTTTCTAAACCCACTCGATCTTCTCTCTGTCTATTCAATTCTGATCTGCGCCTCACAAACATAACAATTCATAAAAGAATGTCATCATCAGAAACACCACTACGGTGGACTCAGCAACAACAAGAAGAAGCAGAAGATAATATCACTGAAGATGAAATGAATAATAATAAGGAGTTGATGTTCGAGAAGGTTCTTACTCCAAGCGACGTTGGGAAGCTCAACCGCATCGTCATCCCAAAGCCCCACGCGGAGGCTCATTTCCCGACCGGCGCTGACGGATACTCGACCGAAGGGAAGGGCCTGCTTCTGAATTTCGAGGACCAATCGGGAAAACAATGGAGGTTCCGTTACTCCTATTGGAGCAGCAGCCAAAGCTATGTTCTCACCAAAGGATGGGGCCGCTACGTTAGGGAAAACCACCTTTCTGCCGGCGACGTCGTTTTGTTCAAGAGGCACCGCCTCCATCCCAATAATTTCTTTGTTAGTTGGAGGCGCCGTGATCCCGGGACCATGCCCCTGGCGGCTAGAGGGAGGAGGAGGAGGAGGAGAAGGGATGAGGGTACCAGTGGTGGTGATGGCAACAGTGAGAGTGTGGTGGTGGGTGATGCTGCTGTTTCTGTTTCTGTGGGGTATCCTACGCACCACCAGCAACATCCCTTCTCATCCTATCATTCCAATGAATATTTTCTTCATGCAGGTGGAGAGTGCCAAGGTGCGAACGAAACGACAATGGTGGAAAACCCTTTGAGTTCAGGTTCGAGGACGCTGAGGCTGTTCGGGGTGAACATGGAATGCCAAGAACAACGAGAGACACGTAATAATAACAATAATAATAATAATTCTGAAACCTTCGCACCCTAA 897 0.4872 MKLNSKSPPRPPLSKPTRSSLCLFNSDLRLTNITIHKRMSSSETPLRWTQQQQEEAEDNITEDEMNNNKELMFEKVLTPSDVGKLNRIVIPKPHAEAHFPTGADGYSTEGKGLLLNFEDQSGKQWRFRYSYWSSSQSYVLTKGWGRYVRENHLSAGDVVLFKRHRLHPNNFFVSWRRRDPGTMPLAARGRRRRRRRDEGTSGGDGNSESVVVGDAAVSVSVGYPTHHQQHPFSSYHSNEYFLHAGGECQGANETTMVENPLSSGSRTLRLFGVNMECQEQRETRNNNNNNNNSETFAP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1922 298 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 39 290 - -
Ahy16g1922 298 ProSiteProfiles B3 DNA-binding domain profile. 73 179 IPR003340 GO:0003677
Ahy16g1922 298 MobiDBLite consensus disorder prediction 278 298 - -
Ahy16g1922 298 MobiDBLite consensus disorder prediction 183 210 - -
Ahy16g1922 298 CDD B3_DNA 72 177 IPR003340 GO:0003677
Ahy16g1922 298 SMART B3_2 73 179 IPR003340 GO:0003677
Ahy16g1922 298 Gene3D - 60 183 IPR015300 -
Ahy16g1922 298 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 290 IPR044800 GO:0003700
Ahy16g1922 298 Pfam B3 DNA binding domain 73 178 IPR003340 GO:0003677
Ahy16g1922 298 SUPERFAMILY DNA-binding pseudobarrel domain 69 177 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1922 Ahy-Chr16 100847900 100851665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1922 46 278 RAV Transcription Factor Family AT5G06250 44.000 6.86e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy16g1922 B3 3.40E-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1922 - - ahf:112758698 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1922 16 100847900 100851665 Ahy16g1922 16 100847900 100851665 ECH
Ahy16g1922 16 100847900 100851665 Ahy6g1673 6 76628031 76631739 hybridization
Ahy16g1922 16 100847900 100851665 Ahy12g2913 12 118862422 118865401 PCT
Ahy16g1922 16 100847900 100851665 Ahy2g2500 2 101264497 101267476 PCT