Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1919 ATGGCGGCTTTTCGGAGAATGATTAGCTTAGGATCGAACAGAACTTTGACTCCACCCTCTCTTCTCACTTTCCGCAGAGGAATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCTGTGCACACGACGGAGAAAGGATTGACTGATGCTTTCTCTGATTGCGGACAAGTAATTGAAGCTAAAATTATAACAGACAGGGTATCGGAGAGATCTAAAGGGTTTGGGTTCGTCACCTTTGCTTCACGGGATGAGGCTGCGAATGCCATTTCACAGATGAATGGGAAGGCACTAAATGGCCGCGATATCTTTGTTGATTATGCGAAACCAACTTATTCCAAGAGTACTGGAATGCCCATTGCAAGAGGACCCCCTGAACTCCCCACAGTTGATAGTTGA 393 0.4631 MAAFRRMISLGSNRTLTPPSLLTFRRGIAFKLFVGGLSVHTTEKGLTDAFSDCGQVIEAKIITDRVSERSKGFGFVTFASRDEAANAISQMNGKALNGRDIFVDYAKPTYSKSTGMPIARGPPELPTVDS* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1919 130 Gene3D - 26 123 IPR012677 -
Ahy16g1919 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Ahy16g1919 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Ahy16g1919 130 SMART rrm1_1 31 104 IPR000504 GO:0003723
Ahy16g1919 130 PANTHER TRANSFORMER-2-RELATED 1 125 - -
Ahy16g1919 130 SUPERFAMILY RNA-binding domain, RBD 30 120 IPR035979 GO:0003676
Ahy16g1919 130 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1919 Ahy-Chr16 100705393 100706892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1919 29 107 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 1.14e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1919 - - pvu:PHAVU_001G192800g 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1919 16 100705393 100706892 Ahy16g1919 16 100705393 100706892 ECH
Ahy16g1919 16 100705393 100706892 Ahy6g1672 6 76262872 76264646 hybridization