Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1881 ATGGACACATCAAATCCTGCAGTTTTTGTCAATGCAGAACTCTTGCAGTTTTATGTTGGAAGGAGGGTTCGGGCTGTGATGCAGGTTGTGCGATCCGAGGGGGGAGTTGTCATTGGAAAATCAACAGATGAGAAGCAGCTAGTTGTGAAAGGGCCACCCCCACCTGCACCTCTTACAAATTTTGTTGAAGTTATTGGCATTGTTGACAATGATAGGTCCATTCGAGCTGAGATATGGACCAATTTTGGCAATGTGATTGATATGTTCAGCTACAATAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAGCACTTGTTTGTGTGA 324 0.4321 MDTSNPAVFVNAELLQFYVGRRVRAVMQVVRSEGGVVIGKSTDEKQLVVKGPPPPAPLTNFVEVIGIVDNDRSIRAEIWTNFGNVIDMFSYNKLCQLANGEFKHLFV* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1881 107 Pfam Replication factor A protein 3 1 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy16g1881 107 Gene3D - 1 107 IPR012340 -
Ahy16g1881 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Ahy16g1881 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Ahy16g1881 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Ahy16g1881 107 CDD RPA3 6 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1881 Ahy-Chr16 98080516 98083369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1881 1 107 Core DNA Replication Machinery Family AT4G18590 63.551 2.09e-49 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1881 K10740 - gmx:100306641 176.022