LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g1844	ATGGGTTCATTCTCTGGCACTTCTGAAATAGTTGAAGCAACAGACGAGCTAAATACAGGGAAAACTACAGCAAGTAATCAGTCCAATAATGGGTGTAGCATAGCTGAGAAAAATCAGAAGCCTCCGGTGCTGAAACTGGGCTACAAGGACAATCTGGACGACGATATTAATAAGCTTTTTGAATCAATTACTCTTAAATCTTCATCAAGAGACTTGGGCCATTTACAAGATGGTACAAGCCCTAAGATGAAAAGTGCATTGAAAAAGCCCATCACAGTGGGTGTTTCTCGGTCCCCGCGAGTTGGGACATCTGAACCTGTGAATTTGAAGCAGGCTTTAAGAGACCTTTGTATTTCTAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAAGCAACAGCTTCTCCAAGAATATCAGAGGTTGGGAAGATACAAACATTGTACAATTCAGTTGTAGCTGAAACCAGTCTACCTGGCCCTCCTTTGGTTGAAAATAAAGAGAATGGAATTGAAATATCCCTAGTGCCAGAAGAAAGTAAGTCAGTTTCGATGGAGAAAACATCTCATTCTTATCAAGGTGCTGAAATCACTTCACCAAGCCAGATCATTCGATCTTCTCCTAAAGTTGCTGTTGCAACCATTCAACATACTTCTAAGGCTTCATTGCCGCAAGTTGATTTGGCATGTTCATCAAGTAAAGTTGGGGTTCACTCACGGCAAGTGGTGCCTGTTCAATCAGAAAAACCACCAACATCTCCCTCTCCATCTCCATGTACCACAACTGGAAGCAAATTGGAGTCATCCAAAATTGTTTCTTCTCCTAAAAAAGTTGGAAATAAACCATCTATATCAAATAATGGGCATAAAGGTAGATTGCAAACATCTTCCTCATCTTCTTCTGTAAATGGCTATAGAGTAAACAAAGTGTCATGTCATACCCCCCGTGCAGTCAAATCAGTCCTCAAGAGCAAGAATTTGAGTAAGAAAAAGCTAAAGGAGTGTTCAGGCTCTGGTTTGTGCAATCCTTCAACCAATAAAGTGAATAATAAGCCAGCTCCTGTTCTAACTCGAATGATTTGCGAGAGATGTCATTGTGCTTTAGAGAATACAAGTGAAGAAAAAGGCCACCATATCACAACACTGGACTCCATCAGTCCTGAAGTGGTGAACTCAGGTGAAGAGCACCATGGTTCAGATAAACCTGATCTGGCATCAACTAACAGTAACAAAGGCAGACCGATTGCAAACGTGAAAAAGAGCACTAAGTTGAAAGACCAACTTGAATTTTCACAAAGTTCAAAAAGTAGCCAAGGTGAGTACAGTAGTAGCACAAGCACCAGTGGCGAAAGTAATGCAAGTGGCTCAAGTTGTGGAACTAGGCCTCACATGTCAAAAGATTTTAGGTGGGAAGCCGTACGACGTGCTCATTTGGAGTATGGAGTCTTGGGCTTGAGACATTTCAATCTTTTGAAGAAACTTGGTTGTGGGGACATTGGGACAGTATATCTTGCTGAACTAATTGGCACAACTTGCTTGTTTGCTATCAAGGTCATGGATAATGAGTTTTTGGCAAGGCGGAAGAAGATGCCAAGGGCACAAACTGAGAGAGAAATATTAAGCATGCTGGATCATCCATTTCTTCCCACATTGTATGCACAATTTACATCAGATAATCTGTCATGCCTGGTTATGGAGTATTGTCCAGGGGGAGATCTTCACGTTCTACGTCAGAAGCAGCTTAGTAGGTGTTTTTCAGAGACAGCAGCAAGGTTTTATGTTGCCGAAGTCCTTCTTGCTTTAGAGTACTTGCACATGCTTGGAGTTGTTTATCGTGACTTGAAACCTGAAAACATTCTTGTCCGGGAAGATGGACACATTATGCTCACAGATTTTGACCTTTCACTAAGGTGTGCAGTTAGCCCAACGCTTCTACAATCCTCTTCCGAGAATGAACCAGCAAAAAGTTCTGGCCCTACCACAAAACCAAGTTGCATTGAGCCATTCTGCATTGAGCCCTCTTGTCAAGTTCCATGCTTCAGCCCTAGATTCTTACCCGCAGCAGCAAAAGCAAGGAAACTAAAAGTTGATCTTGCAGCCCAGATTAGATCATTGCCACAGCTTGTGGCCGAGCCCACCGATGCCAGATCAAACTCATTTGTTGGAACACATGAATACTTGGCTCCTGAGATCATCAAAGGAGAGGGACATGGAGCTGCAGTTGACTGGTGGACGTTTGGGGTTTTTCTTTACGAGCTCTTATATGGTAGAACACCCTTCAAAGGCTGCAATAATGAAGAAACACTAGTGAACGTGGTGTTGCAGAGTCTTAGGTTCCCAGACAGCCCATTTGTTAGCTTCCAAGCGAGGGATCTGATAAGAGGGTTGCTGGTTAAGGAACCTGAGAACCGTTTGGGATCAGAGAAAGGTGCTGCTGAGATTAAACAGCATCCTTTCTTTGATGGCCTCAACTGGGCCTTAATTCGTTGTGGTCTCCCACCAGAGATTCCAGAGTATTGTGATTTTGGAGTTTCTGATGTGACACCAGAAAGCAAGGGTGGTAAGTATTTAGAGTATAATGCAACTGGAGAGCATCTGGAGTTCGAGTTGTTCTAG	2616	0.4285	MGSFSGTSEIVEATDELNTGKTTASNQSNNGCSIAEKNQKPPVLKLGYKDNLDDDINKLFESITLKSSSRDLGHLQDGTSPKMKSALKKPITVGVSRSPRVGTSEPVNLKQALRDLCISKASEMAAMKRLSKATASPRISEVGKIQTLYNSVVAETSLPGPPLVENKENGIEISLVPEESKSVSMEKTSHSYQGAEITSPSQIIRSSPKVAVATIQHTSKASLPQVDLACSSSKVGVHSRQVVPVQSEKPPTSPSPSPCTTTGSKLESSKIVSSPKKVGNKPSISNNGHKGRLQTSSSSSSVNGYRVNKVSCHTPRAVKSVLKSKNLSKKKLKECSGSGLCNPSTNKVNNKPAPVLTRMICERCHCALENTSEEKGHHITTLDSISPEVVNSGEEHHGSDKPDLASTNSNKGRPIANVKKSTKLKDQLEFSQSSKSSQGEYSSSTSTSGESNASGSSCGTRPHMSKDFRWEAVRRAHLEYGVLGLRHFNLLKKLGCGDIGTVYLAELIGTTCLFAIKVMDNEFLARRKKMPRAQTEREILSMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRCFSETAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLQSSSENEPAKSSGPTTKPSCIEPFCIEPSCQVPCFSPRFLPAAAKARKLKVDLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLVNVVLQSLRFPDSPFVSFQARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFDGLNWALIRCGLPPEIPEYCDFGVSDVTPESKGGKYLEYNATGEHLEFELF*	872

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy16g1844	871	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	1	871	-	-
Ahy16g1844	871	MobiDBLite	consensus disorder prediction	258	308	-	-
Ahy16g1844	871	Pfam	Protein kinase domain	717	820	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy16g1844	871	Pfam	Protein kinase domain	489	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy16g1844	871	MobiDBLite	consensus disorder prediction	1	40	-	-
Ahy16g1844	871	MobiDBLite	consensus disorder prediction	427	461	-	-
Ahy16g1844	871	CDD	STKc_phototropin_like	486	838	-	-
Ahy16g1844	871	Gene3D	Transferase(Phosphotransferase) domain 1	713	829	-	-
Ahy16g1844	871	Gene3D	Transferase(Phosphotransferase) domain 1	572	637	-	-
Ahy16g1844	871	ProSiteProfiles	Protein kinase domain profile.	488	820	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g1844	Ahy-Chr16	94735163	94740240	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g1844	1	871	AGC Kinase Gene Family	AT2G36350	52.296	0.0	855

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Ahy16g1844		Pkinase	5.30E-36	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g1844	-		K08286	gmx:100792120	1231.08

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy16g1844	16	94735163	94740240	Ahy6g1603	6	68062613	68067833	hybridization
Ahy16g1844	16	94735163	94740240	Ahy12g2965	12	119260546	119265354	PCT
Ahy16g1844	16	94735163	94740240	Ahy2g2550	2	101662621	101667429	PCT
Ahy12g2965	12	119260546	119265354	Ahy16g1844	16	94735163	94740240	PCT
Ahy2g2550	2	101662621	101667429	Ahy16g1844	16	94735163	94740240	PCT

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