Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1828 ATGGGAAAGATATACAAGGGATTCCATGGGAAAAGCTTAACTACAGCTATAGAAGTACCGCGAAACTCGATTGAATCAGAGTGTTTGGAAGTGCAGAAGGGGAAGGCCATCTATGACTTCCAATTCAACACAAGGCTTCTTGACCGCTTCCTTGTGAGGAGGACCGACAGCAATTTCAATGCCATGATACTGAAGCACTTGTTCATGAGCAAGGAAGGTAAAATTGCCGTGGTAGTAGGAATTGTAACCGATGATATCAGAGTGTATGAAGTTCCTGCATTGACTGCACTCAGGTTTACAAAGACTGCACGTGCTAGAATAGAGAAGGCCGATGGTGAATGCTTGACATTTGATTAG 357 0.437 MGKIYKGFHGKSLTTAIEVPRNSIESECLEVQKGKAIYDFQFNTRLLDRFLVRRTDSNFNAMILKHLFMSKEGKIAVVVGIVTDDIRVYEVPALTALRFTKTARARIEKADGECLTFD* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1828 118 PANTHER 60S RIBOSOMAL PROTEIN L18 71 118 IPR000039 GO:0003735|GO:0005840|GO:0006412
Ahy16g1828 118 PANTHER 60S RIBOSOMAL PROTEIN L18 47 71 IPR000039 GO:0003735|GO:0005840|GO:0006412
Ahy16g1828 118 SUPERFAMILY Ribosomal proteins L15p and L18e 45 117 IPR036227 -
Ahy16g1828 118 Pfam Ribosomal protein 60S L18 and 50S L18e 71 118 IPR021131 -
Ahy16g1828 118 PANTHER 60S RIBOSOMAL PROTEIN L18-2-LIKE 47 71 - -
Ahy16g1828 118 Gene3D - 40 118 - -
Ahy16g1828 118 PANTHER 60S RIBOSOMAL PROTEIN L18-2-LIKE 71 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1828 Ahy-Chr16 91302908 91304221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1828 48 118 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 59.341 1.65e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1828 K02883 - pvy:116110370 109.768