Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1816 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAATACGACGACGAGGCAAGTGACGTTCTCAAAGAGAAGGAACGGACTCCTGAAGAAGACCAATGAGCTCTCTGTCCTCTGTGACGCCCAGATAGGACTCATCGCCTTCTCCAACACTGGTAAGCTCTCTCACTACTCCTCTCACCCCTACAGGATGGATCAAATAATTGAAAATTACCAACGATCTACAGGGACTCACATAATGCACCATGGACATGCCCATGATCAGGTAGAAGATTTATTGACTGAGATGGCAATGCTGAGGCGTCAAAATCTAAGCCTTGAGATGGGGATTCAGCGCTACCTTGGAGAAGGCATAGCTTTTCTCCAATACGAAGAATTGACTAAGCTTGAAGGAGAACTTCAAAGCTCTGTTGCAAGGGTTCGAAAGCGTCAGGAAAAAGATTCTATGCTCATCAAATTTGTTTAG 465 0.4473 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIAFSNTGKLSHYSSHPYRMDQIIENYQRSTGTHIMHHGHAHDQVEDLLTEMAMLRRQNLSLEMGIQRYLGEGIAFLQYEELTKLEGELQSSVARVRKRQEKDSMLIKFV* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1816 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy16g1816 154 Pfam K-box region 86 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy16g1816 154 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Ahy16g1816 154 ProSiteProfiles K-box domain profile. 89 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy16g1816 154 PANTHER MADS BOX PROTEIN 1 145 - -
Ahy16g1816 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy16g1816 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy16g1816 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy16g1816 154 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ahy16g1816 154 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Ahy16g1816 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy16g1816 154 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 145 IPR031050 GO:0005634|GO:0048316
Ahy16g1816 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1816 Ahy-Chr16 87565426 87566647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1816 1 144 MADS-box Gene Family AT5G23260 52.778 1.33e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy16g1816 K-box 7.20E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1816 - - ahf:112758495 305.834