Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1659 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGAGTCTCCGATGACGACGAGGACGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGACAACGAAGAGGACGAAGATTCATCGCCTAGGGCTTTGCCAGTGGCTCCTTCCACAACTTCTAATCCACAGCCAATTGTTATCACCGTGGAATCGCAGTCTCATAGCAGCTTCGGAGACGACGACGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCAAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATTCGGTCGCTTGAAGCCAAATGTGCTGCGCTGGAAAGTAAGGGTGCTGATTGGTGTGCGAAAGAGGCTCTATGGAGGAAAAGAGAAGCTGCATACCGTCTGGAAATTCAGAAGCTTAAAGCGCTGCTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAGCATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGATGTTATCAGTGCTCAGTGTGCAGAGCAAGAATACTGTTGTCAACTATGATCTACAGGTTCCTCCTTGGTCGTGTTCTTGGGATCTCAACAGTTCACATTACATGTATGCTGGACTTCAGAATGGTTGTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAGTCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAAACTTCATGTCTTCCTAACTCCATCTTATCTGCATCTGCCGTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGAAACTGATAACCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGTTTCATACCGTCCGAAATTTGACATGTCAATGGGTACGCAGCTTTCTCAACTATCATCCACTCCTTCTCAAGTAATTGGAGCAGGAATGCAGGGCTGTCATGTCTTATTCAAGAGACAGGGAACTGATTATTTCAAAAAGATGGGTTTCTCGAATGCCAATCCAAGTAAAATTCGATTTCCAAAACATGCTATTATAGACATAGAGGGTCAAAGAAGTTTGTTTGCAGCTGTAGATGAAGCAACGTTTGAATTGATCTTGCATGAGCTGCCTTCTTTTAGCGTCAACCAACGATTCAAACTGCCTGCTCAGGCTCGTGATATTAGGTACTCTCGGAGCTGTGGAATTCTTGGCTGTTTGAGTGAGACGACATTGCAACTTTTCTACACCAAAGTCTTGTGA 1869 0.4409 MDNPFDHHVPPPHATVTAADYGVSDDDEDEEEEEEEEEEEEEEEEDDNEEDEDSSPRALPVAPSTTSNPQPIVITVESQSHSSFGDDDVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASQVVTVDDESQKKIRSLEAKCAALESKGADWCAKEALWRKREAAYRLEIQKLKALLLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKAFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKMLSVLSVQSKNTVVNYDLQVPPWSCSWDLNSSHYMYAGLQNGCVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQTSCLPNSILSASAVGLCQWNIDSEEGPFMLPETDNQGVCISLAYCPSSDDIVVSYRPKFDMSMGTQLSQLSSTPSQVIGAGMQGCHVLFKRQGTDYFKKMGFSNANPSKIRFPKHAIIDIEGQRSLFAAVDEATFELILHELPSFSVNQRFKLPAQARDIRYSRSCGILGCLSETTLQLFYTKVL* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1659 622 Gene3D - 264 500 IPR015943 GO:0005515
Ahy16g1659 622 Coils Coil 23 54 - -
Ahy16g1659 622 SMART ring_2 126 171 IPR001841 -
Ahy16g1659 622 SUPERFAMILY WD40 repeat-like 282 491 IPR036322 GO:0005515
Ahy16g1659 622 SUPERFAMILY RING/U-box 117 178 - -
Ahy16g1659 622 MobiDBLite consensus disorder prediction 59 85 - -
Ahy16g1659 622 ProSiteProfiles Zinc finger RING-type profile. 126 172 IPR001841 -
Ahy16g1659 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 233 IPR013083 -
Ahy16g1659 622 MobiDBLite consensus disorder prediction 22 53 - -
Ahy16g1659 622 Pfam Ring finger domain 126 172 IPR001841 -
Ahy16g1659 622 PANTHER RFWD3 PROTEIN 27 617 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Ahy16g1659 622 Coils Coil 192 212 - -
Ahy16g1659 622 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 27 617 - -
Ahy16g1659 622 MobiDBLite consensus disorder prediction 1 113 - -
Ahy16g1659 622 CDD mRING-C3HGC3_RFWD3 122 172 - -
Ahy16g1659 622 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1659 Ahy-Chr16 50244399 50249478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1659 45 184 C3H Transcription Factor Family AT5G48655 28.758 1.19e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1659 K15691 - gmx:100818898 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1659 16 50244399 50249478 Ahy16g1659 16 50244399 50249478 ECH