Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1610 ATGAGTCATGGTGCCCCTCAGTACCACAAGGACGAGGTGGTTCGTGATCTGTCTTCTGAAACTAATAATACTCTGGAGAACGGACCTGTTATGCACAACATGATTGCTACAAAAGCTGACGTAGGGCATTCCACGTCAAGGTGTGGCGGCTCTGAACAATGTAAAGATAATACACAAACTGGTGTTCATGTAAAAGATAAAAAAGCTGTTGGAGAACTTGTATGTTTGCAGTGCTTACATGGTAGTGAACTCATTTGCTGCTTTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGAATCCTCCTCTCAATTACTACCCTGTGGGCTTCTGGAATTGTGCATGGTGTGTTAAAAAAAAGCTAGATCTTGGTGCGTACTCCATTTCTGAAGGGGTGGAGTCCATCTTGGATTCTAGAGAAGGCATTTCGAAAAACAATGTGACGGAAAAGGAGTACTTTGTCAAGTATCTGGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAAACACAAATGCTTGAAGAGGGGCCAAAAGTTTTGTCAGCATTTAAGAGGAAGCGCCGGGTTATCAAGTGGAAAAAAGAATGGAGTATACCTCACCGCTTGTTGCTAAAAAGAGCAATTGTGTTACCAAAGCAAAATAAAGAACATTTAGATGGGCATGATAACAATTATTCAGTTGGCTGTTTTGAATGGCTTGTAAAGTGGTCTGGTCTTGGATATGATCATATTACATGGGAACTAGATAGTGCTTCCTTTCTAACGTCGTCTGAAGGCATAAAACTCAAAAATGATTATGAAAGTCGTCGTCTTCGAAAGGGGATGGATGGAGACGTTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTACCTGTACCGCCTTCAGGTAATTCAGTGGCAGTTTCTAGTCAGCATTTGAGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAGGTCAGAGTGCTGTCATTGTAGATGATAAGATTGACCAGGAGCGGGTTATGAAGGTGATGTCATTTATATTGTCATTGCATTGTAAGGGAAACAAAGATGTACGGAGAAGCATAAGGACCTTGGAGTTTTATAACGATGACAATGGCATCTTATTTCAAATATTATTATCATCGCCTGATATTATTGTTGAGGACTTAAAGGAACTACGATGCATTTCGTGGGAAGCAATAATAGTTGATGAATGCCAGCGACCTAGAATTTTGGAACACCTTGACAATATCAAGATTTTGACAACAAAGTTGAGGCTCCTGGTTGTTAGCGGACAGATCAAGGATGATCGAGCTGATTATGTCAAAATGCTTTCCTTCCTCAACTCTGAAAATCATGTGTTAAATACTACTGAAACAGAGCCATTAGTCTCTGATAGCATTTCCAATTTGAAAAGCAAATTGGATCAATATGTGGCATTTAGAACAAAAACAGGGTCCACTAGGTTTGCAGAGTTTTGGGTTCCTGCCAAGCTTTCGAGTTTGCAACTTGAGCAGTATTGTTCATTGCTGCTTTCTGACAGAACTCTGCTATGCTCAGCCCAAAAGTCTGACAAGGTCAATGCCCTCCGCAGCCTGCTTAACTCAACAAGGAAGTGCTGCAACCATCCCTTTCTCTTGGACTCGTCGCTATATAATTCCATCAATAAAGGTCTGTCTGTTGAAGAGCAGTTGAATATTGGGATAAAAGCAAGTGGCAAATTGCAGCTTCTTGAAAAAATCCTTTTGAAAGCAAGAAGTCGTGGTTTAAGAGTGATGATATTATTTCAGTCAACTAGTGATTTGACATCGATTGGAGATATTTTGGATGATGTACTCTGTCGGAGATTTGGTGAACATTGTTATGTACGATATGCTGCTGGGTATGCGCCCAAAGTGAAGCAAAGTGCTCTAGACAAATTTAATGACGGCGAAAGAGCATTTGTCTTCTTGTTGGAAAGTCGTGCTTGCCTCCCTAGTGTTAAGCTTTCCTCTGTTGATACCATTATATTGTTTGACAGTGACTGGGACCCAGAAAATGATTTAAGAGTCTTACAACGGATGCCTATAAGCTCACAGTACGAACAGTTAACAGTGTTTAGACTATACTCATCTTTTACTGTTGAAGAAAAGGTTCTAATGCTTGCAAAAGAGGGTAGTAGTATCCAGTTGCTTAACCATAGTACCTCTCATGCCGTGCTCCGATGGGGTGCCACCAATCTTTTCAGTAAGCTTGATGACTTACATGGCAGCAACACTCCAGTCGTTGCTCAAGACATTGCCTCTGATCAGTCACTTCTACATGATGTAATCTGTGAGTTATCAACCGTATTTTCTGGTGGAAGCGGTGACATTGATCATCATGAATTGTCCTTCATAGCGAGAGTATGGCAGAAAGGAGGGGAATATGCAAAGAACATTTTATTGCATGGGGAAAGAGTGACGAAGGAAATGGATGATGGTTTTGATGTTTTTTCTTGGAGTAATCTCCTTCAGGGAAGGAGTCCTAGATGGAAATTGTTGTCTGTTCCATCTCAAAGGATCAGAAAACCTGTCAATCACTTTGATCACAAAGCAAAGGAATCTGAAAGTGAAAATAATGCTGATAATAGAAAGAAGAGGAAAGTGTCTGAGGGTAACGATCCCAAAAGCAAGGAAGTGTCCAAGGATACTACATTCACAAGGAAGGGGAAAGTGCCAGATCATGTCAATTCCAAATATTTGAAAAAAAGTTTGAAGAACAAGAAGCTAAACACTAGTAATGTAGATGAGTTCTTGCCAAAGCCAGATTTAGCAGGTCTTTGTGATGTTCTACAACTTCCAAAAAATGTCAAGGCTCTTGGTGCAAGGCTTCTTGAGCACATACTGGAATATTTCAACGTTAATTGGCGAGACGTTTCTACCATGCAGGCATTTGAATTATCTGTGTGTTGGCTTGCGGCTTCGTTATTGAAGCACAATTTTGATAAGCAAGGTTCACTTGCACTTGCAAAAGTGCACTTGAACTTCAATTGCGAGGAAGAGGAAGTAACCTATGTTTACTCTAAACTGCTGAAATTTAAGAAGGAATTTTCAAGTTGTTTACAAAGTGGAATTTGTGTTGAGAAATGTACATCAGACTGCGAAACACCTGGGTTGACAGATTTGGTGGAGGATATGCAAAATGGTTTTCACGGTCCTCTAGAATCCGACACATATAGACATGATCTTCAAAGGGAATCTCCCACAACTGTGCTAGCTACTCATTACCAGACTTGTGCAGAAAATTTAAAAATCAGACTTACAGATATTGGAAGTTGTCCTCAAAAGTCATCTGGCACTTTCCCTGCCAAAGCATATGCTATCCCCGTGACATCCAAAGCTGCTTTCTTGGAGCATCAGAGTGAGGTCTTCGATTCAAGTGATGATCCTTGTAATGTCAATCCTGCCACTGGTTCTTTGGAAAATCAAATTAATGGCGATGATTCTGAAGTTTCTCTAATAAATAATAATGAAGTGGTTGAGACAATCACTTGCAGTACTGCTGATGTTCCTGAGGTCAACCAGCATTACAGTGAAGTGAGTGCTGTCCATGGTGAGTCTATTATGGATTTTCCTGAGACTACTTTCCCATATATGGAACCATCAAATACAGATCTACTGCCACTGCCTCAGGAGGATGTTACATCTTTTTTGGAGAATATTTCAATTGGTGAAGTCTTGCCTTTTGATGAAATATTTTATGAAAATTATAACCTTCATGAGGCTGAACCAACATTACAAGTTCCAGATGACCCACCTGAATCAGTCCCAGACCCATTGCAAATTGAAATGGAGAGAATAAAAAAGGCGACTGAAGAAGCTAACAGGATACGCCAGCAGAAATTACACCAGCTTGAGTCAGACCATGGTATGGAGGTTAAAGAATTGGTTGCAAAGTATCAAATGTTGCTTCAGAGTATCAGTACTGAAGTAGCATTGCAAAAAAAGGAACTTGACGCATATTATAAAACAGTTCAAAAGAATAAGTTGTTGGCTTCTGTTTTGGACCACAATCACAAGGAATATAAAAGAGAAGCAGTTCTATTCGCAGAACAAGGCTTACCCTCTGCAATGGGAACACCTAGCTCCTCAAGTACTCAACAAAGAGAGCACCATCCCCCTCTTATGCCTGATCAAAGACTCGAACAGTGTCTACCGATGATTCCCCCACACTTGTTTACTCCAACGGAAGCGGTTAATGCTCTGGAGATTGCTAAGACTTCAACAGCCATTCCAGAAATGAGCCCAGTTAGAGAATGTATTGATCCCATGATTCAGTCCTATGTAAACTTGAATTACGGCTGTTATTCAGTGGCCTCAAACCCCCCTCTTGAAGCCTCTAATTCAGTGCCTATCATGCCAAGTCTAACTAGTGGAATACCAGAACAGCAATTGCCACTACATTTACCTCAATGGCAATATCAGTAA 4437 0.4073 MSHGAPQYHKDEVVRDLSSETNNTLENGPVMHNMIATKADVGHSTSRCGGSEQCKDNTQTGVHVKDKKAVGELVCLQCLHGSELICCFGKGCQRRYHPSCLNPPLNYYPVGFWNCAWCVKKKLDLGAYSISEGVESILDSREGISKNNVTEKEYFVKYLGLAHAHNRWIPETQMLEEGPKVLSAFKRKRRVIKWKKEWSIPHRLLLKRAIVLPKQNKEHLDGHDNNYSVGCFEWLVKWSGLGYDHITWELDSASFLTSSEGIKLKNDYESRRLRKGMDGDVNEERKASFAELPVPPSGNSVAVSSQHLSYVNKLCMCWHKGQSAVIVDDKIDQERVMKVMSFILSLHCKGNKDVRRSIRTLEFYNDDNGILFQILLSSPDIIVEDLKELRCISWEAIIVDECQRPRILEHLDNIKILTTKLRLLVVSGQIKDDRADYVKMLSFLNSENHVLNTTETEPLVSDSISNLKSKLDQYVAFRTKTGSTRFAEFWVPAKLSSLQLEQYCSLLLSDRTLLCSAQKSDKVNALRSLLNSTRKCCNHPFLLDSSLYNSINKGLSVEEQLNIGIKASGKLQLLEKILLKARSRGLRVMILFQSTSDLTSIGDILDDVLCRRFGEHCYVRYAAGYAPKVKQSALDKFNDGERAFVFLLESRACLPSVKLSSVDTIILFDSDWDPENDLRVLQRMPISSQYEQLTVFRLYSSFTVEEKVLMLAKEGSSIQLLNHSTSHAVLRWGATNLFSKLDDLHGSNTPVVAQDIASDQSLLHDVICELSTVFSGGSGDIDHHELSFIARVWQKGGEYAKNILLHGERVTKEMDDGFDVFSWSNLLQGRSPRWKLLSVPSQRIRKPVNHFDHKAKESESENNADNRKKRKVSEGNDPKSKEVSKDTTFTRKGKVPDHVNSKYLKKSLKNKKLNTSNVDEFLPKPDLAGLCDVLQLPKNVKALGARLLEHILEYFNVNWRDVSTMQAFELSVCWLAASLLKHNFDKQGSLALAKVHLNFNCEEEEVTYVYSKLLKFKKEFSSCLQSGICVEKCTSDCETPGLTDLVEDMQNGFHGPLESDTYRHDLQRESPTTVLATHYQTCAENLKIRLTDIGSCPQKSSGTFPAKAYAIPVTSKAAFLEHQSEVFDSSDDPCNVNPATGSLENQINGDDSEVSLINNNEVVETITCSTADVPEVNQHYSEVSAVHGESIMDFPETTFPYMEPSNTDLLPLPQEDVTSFLENISIGEVLPFDEIFYENYNLHEAEPTLQVPDDPPESVPDPLQIEMERIKKATEEANRIRQQKLHQLESDHGMEVKELVAKYQMLLQSISTEVALQKKELDAYYKTVQKNKLLASVLDHNHKEYKREAVLFAEQGLPSAMGTPSSSSTQQREHHPPLMPDQRLEQCLPMIPPHLFTPTEAVNALEIAKTSTAIPEMSPVRECIDPMIQSYVNLNYGCYSVASNPPLEASNSVPIMPSLTSGIPEQQLPLHLPQWQYQ* 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1610 1478 MobiDBLite consensus disorder prediction 1359 1375 - -
Ahy16g1610 1478 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 36 1024 - -
Ahy16g1610 1478 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1236 1448 - -
Ahy16g1610 1478 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1236 1448 - -
Ahy16g1610 1478 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 36 1024 - -
Ahy16g1610 1478 MobiDBLite consensus disorder prediction 1358 1380 - -
Ahy16g1610 1478 MobiDBLite consensus disorder prediction 847 895 - -
Ahy16g1610 1478 SMART chromo_7 131 190 IPR000953 -
Ahy16g1610 1478 SMART chromo_7 197 270 IPR000953 -
Ahy16g1610 1478 SUPERFAMILY Chromo domain-like 91 193 IPR016197 -
Ahy16g1610 1478 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 573 745 IPR001650 -
Ahy16g1610 1478 ProSiteProfiles Zinc finger PHD-type profile. 72 121 IPR019787 -
Ahy16g1610 1478 SMART PHD_3 74 119 IPR001965 -
Ahy16g1610 1478 CDD CD_CSD 134 187 - -
Ahy16g1610 1478 Gene3D - 348 485 IPR038718 -
Ahy16g1610 1478 Gene3D - 1260 1340 - -
Ahy16g1610 1478 CDD SF2_C_SNF 568 684 - -
Ahy16g1610 1478 Gene3D - 486 715 IPR027417 -
Ahy16g1610 1478 Gene3D - 210 263 - -
Ahy16g1610 1478 ProSiteProfiles Chromo and chromo shadow domain profile. 204 249 IPR000953 -
Ahy16g1610 1478 SUPERFAMILY Chromo domain-like 230 253 IPR016197 -
Ahy16g1610 1478 Pfam Chromo (CHRromatin Organisation MOdifier) domain 134 188 IPR023780 -
Ahy16g1610 1478 Gene3D - 133 193 - -
Ahy16g1610 1478 ProSiteProfiles Chromo and chromo shadow domain profile. 132 197 IPR000953 -
Ahy16g1610 1478 Coils Coil 1263 1283 - -
Ahy16g1610 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 715 IPR027417 -
Ahy16g1610 1478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 125 IPR013083 -
Ahy16g1610 1478 ProSitePatterns Zinc finger PHD-type signature. 75 118 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1610 Ahy-Chr16 42331134 42350855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1610 566 708 RAD5 or RAD16-like Gene Family AT5G43530 27.972 5.65e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1610 - K11643 gmx:100813574 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1610 16 42331134 42350855 Ahy6g1449 6 32925162 32945578 hybridization