Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1609 ATGGAACAAATCACCATGACCAACGGCAACGGTAACGGCCACCTCCACCACCAGAACCACAATGACTCATTCTGCTTGAAAACCGCCACAACCACCAATAATAACGGCAGTGACCCGTTGAATTGGGGAGCGGCCGCAGAGGCACTGAAGGGGAGCCACCTGGATGAGGTGAAGCGCATGGTAGCGGAGTACCGGAAGCCGGTGGTGAAGCTGGGCGGAGAGACGCTGACGATATCTCAGGTGGCGGCAATCGCGGCGCACGACCAAGGTGTGACCGTTGAGCTGTCGGAATCGGCGAGGGCGGGCGTTAAGGCCAGCAGCGATTGGGTTATGGACAGCATGAACAACGGCACTGACAGTTACGGCGTCACTACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTCTCCAGAAAGAGCTCATCAGGTTCTTGAATGCTGGAATATTTGGCAATGGCACAGAATCAAGCCACACATTGCCACACACGGCAACAAGAGCAGCAATGTTAGTGAGGATCAACACTCTTCTCCAAGGCTACTCTGGCATCAGGTTCGAAATCTTGGAAGCCATAACCAAGCTCTTGAACACCAACATCACACCATGCTTGCCACTCCGCGGCACAATCACAGCGTCCGGGGACCTCGTCCCACTCTCATACATAGCGGGACTGCTCACCGGAAGGCCCAACTCGAAAGCAGTGGGGCCATCCGGGGAGCTACTCAATGCCAAGGAGGCATTCGAATTGGCCGGAATCAACGCCGACTTCTTTGAATTGCAGCCTAAAGAAGGCCTTGCACTTGTCAACGGCACCGCAGTGGGTTCCGGCCTGGCCTCTATAGTTCTGTTTGAGGCGAACGTGCTTGCGGTTTTGTCGGAAGTTCTTTCGGCTATTTTCGCCGAAGTGATGCAGGGGAAGCCAGAGTTCACCGATCACTTGACTCACAAGCTAAAGCACCACCCTGGCCAAATTGAAGCAGCTGCTATAATGGAACACATTTTGGATGGAAGCTCATACATGAAAGCCGCTAAGAAGTTACATGAAACGGATCCATTGCAGAAGCCGAAGCAAGATCGCTACGCCCTTAGAACTTCGCCGCAATGGCTTGGTCCTCTTGTGGAAGTGATTAGGTTTTCAACCAAGTCGATCGAGAGAGAGATTAACTCTGTTAATGACAATCCTTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACCCCAATTGGAGTCTCCATGGATAACACGCGTTTGGCTTTGGCTTCGATAGGAAAACTCATGTTCGCGCAATTCTCGGAACTTGTCAATGATTTCTATAACAACGGCTTGCCTTCGAATCTCTCTGCTGCTAGGAATCCAAGCTTGGATTACGGATTCAAAGGTGCCGAAATTGCAATGGCTTCTTACTGCTCTGAGATTCAATACCTAGCGAATCCGGTAACCAGCCATGTGCAGAGTGCTGAGCAGCACAACCAGGATGTGAACTCGTTGGGTTTGATTTCTTCTAGAAAGACCAATGAAGCTATTGAGATTCTCAAACTCATGTCTTCCACTTTCTTGATGGCACTTTGCCAAGCCATTGACTTGAGGCATCTAGAGGAGAATTTGAAGAACGCTGTCAAGAACACTGTCAGCTTAGTCGCCAAGAGATCGCTTACCACCGGCGTTAACGGGGAGCTTCATCCTTCAAGATTTTGCGAAAAGGATTTACTCAAAGTGGTTGATAGGGAGCATATTTTCACCTATATTGACGATCCTTGCAGCGCTGTTTACCCGCTAATGCAGAAGCTGAGGCAAGTGCTTGTGGACCACGCTTTGGCCAATGCAGAGAGTGAGAAGAACGCAAACACCTCCATCTTCCAGAAGATTGCGATCTTCGAGGACGAGTTGAAGGCCGTGCTGCCAAAGGAGGTTGAGGGAGCTAGAATCGCTTATGAGAGTGGAAACTCAACGATCCCAAACAAGATCAAGGAATGCAGGTCCTACCCACTTTACAGGTTTGTCAGGGAGGAATTGGGAACCGGTATGCTCACCGGCGAAAAGGTTAGGTCACCGGGCGAAGAATTTGACAAGGTTTTCACAGCCATGTGCCAGGGGAAGATCATTGATCCTCTACTTGAATGCCTTGGAGAGTGGAACGGTGCTCCTCTTCCTATTTGTTAG 2190 0.5064 MEQITMTNGNGNGHLHHQNHNDSFCLKTATTTNNNGSDPLNWGAAAEALKGSHLDEVKRMVAEYRKPVVKLGGETLTISQVAAIAAHDQGVTVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGELLNAKEAFELAGINADFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSAARNPSLDYGFKGAEIAMASYCSEIQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLMALCQAIDLRHLEENLKNAVKNTVSLVAKRSLTTGVNGELHPSRFCEKDLLKVVDREHIFTYIDDPCSAVYPLMQKLRQVLVDHALANAESEKNANTSIFQKIAIFEDELKAVLPKEVEGARIAYESGNSTIPNKIKECRSYPLYRFVREELGTGMLTGEKVRSPGEEFDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1609 729 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 29 729 - -
Ahy16g1609 729 Gene3D - 29 275 IPR024083 -
Ahy16g1609 729 Gene3D - 542 663 IPR023144 -
Ahy16g1609 729 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 38 718 IPR005922 GO:0005737|GO:0006559|GO:0016841
Ahy16g1609 729 PANTHER HISTIDINE AMMONIA-LYASE 29 729 IPR001106 -
Ahy16g1609 729 Gene3D Fumarase/aspartase (Central domain) 276 724 - -
Ahy16g1609 729 SUPERFAMILY L-aspartase-like 38 729 IPR008948 GO:0003824
Ahy16g1609 729 Pfam Aromatic amino acid lyase 76 552 IPR001106 -
Ahy16g1609 729 CDD PAL-HAL 74 539 IPR001106 -
Ahy16g1609 729 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 211 227 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1609 Ahy-Chr16 42031012 42036555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1609 35 729 Monolignol Biosynthesis Gene Families AT2G37040 84.892 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1609 K10775 - gmx:100788438 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1609 16 42031012 42036555 Ahy19g2610 19 146305097 146312025 ECH
Ahy16g1609 16 42031012 42036555 Ahy16g1609 16 42031012 42036555 ECH
Ahy16g1609 16 42031012 42036555 Ahy6g1448 6 32131772 32137117 hybridization