Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1596 ATGGGCAACGCATCGAGTAGCGGCGGCACCACCCGTCGGCGACATGTTGTTTCTAGAAGGACTCATCCACCGCCTCCTCCTCCGGTGACGCCGCAGCCGGAGATCACCTCCAATCCCTTCCTGTATCCCGGAGGCAACCCGTACCCGGCTCAGTACCCGAACCAGAACCGTCCGATGCAATACCCGCAGTACCCTTACCCCGCTTACTACCCTCCGCCGCCGACGGTGCCCTTCCCCCACCACAACCAGCACCAGCACCAACACCAGCCTCAAATGGGGGTCGGGTGGGTTGGCGGCCGAGGTTACCCTTGCGGGACCATGGTGGCTCCTCCAGCACCTATCGTGGAGCACCAGAAGGCCGTGACAATCAGGAACGACGTAAATGTCAAGAAGGAAACATTGAAGATCGAGCCCGATGAGGAGAACCCTGGCCAATTCCTCGTCTCATTCACGTTTGACGCCACGGTTTCTGGCTGCATCACAATTTATTTCTTTGCGAAAGAAAATGAAAGCTGCATTCTAACACCAGTGAAAGAAAACCTTCTCGCACCCATGACGGTTAATTTTCAGCAAGGTCTTGGCCAGAAGTTCAGGCAGCCTGCTGGAAGTGGTATTGATTTTAAAATGTTGAATGAGACAGAATTATTGCAAGTGGGTGAGATGGATGTCTACCCTCTAGTAGTAAAGGCAGATGCATCTCCTAGTAATACCAATGGATCTGATGAAACTACAACATCTAATACCAGAAACTCGCAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGTAAAAGTTGTCAAGCAGATTTTGTGGGCAAATGGAATGAGGTATGAGTTGCAGGAGATATACGGTATTGGAAGTTCAACAGAGACTGGTGCAGATGAGAGTGACCAGGGGAAAGAATGTGTCATCTGTTTGACAGAGCCTCGCGACACAATTGTGCATCCCTGCCGACATATGTGCATGTGTAATGGATGCGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGACCTGAGGAATGA 1083 0.506 MGNASSSGGTTRRRHVVSRRTHPPPPPPVTPQPEITSNPFLYPGGNPYPAQYPNQNRPMQYPQYPYPAYYPPPPTVPFPHHNQHQHQHQPQMGVGWVGGRGYPCGTMVAPPAPIVEHQKAVTIRNDVNVKKETLKIEPDEENPGQFLVSFTFDATVSGCITIYFFAKENESCILTPVKENLLAPMTVNFQQGLGQKFRQPAGSGIDFKMLNETELLQVGEMDVYPLVVKADASPSNTNGSDETTTSNTRNSQITQAVFEKEKGEFRVKVVKQILWANGMRYELQEIYGIGSSTETGADESDQGKECVICLTEPRDTIVHPCRHMCMCNGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1596 360 MobiDBLite consensus disorder prediction 232 251 - -
Ahy16g1596 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 355 IPR013083 -
Ahy16g1596 360 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 305 345 IPR045195 -
Ahy16g1596 360 SUPERFAMILY RING/U-box 305 350 - -
Ahy16g1596 360 MobiDBLite consensus disorder prediction 1 48 - -
Ahy16g1596 360 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Ahy16g1596 360 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
Ahy16g1596 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 359 - -
Ahy16g1596 360 PANTHER MAHOGUNIN 1 359 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1596 Ahy-Chr16 40787224 40790087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1596 102 325 C3H Transcription Factor Family AT3G09770 60.870 2.25e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1596 - - aprc:113862864 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1596 16 40787224 40790087 Ahy16g1596 16 40787224 40790087 ECH
Ahy16g1596 16 40787224 40790087 Ahy6g1435 6 29597607 29600467 hybridization
Ahy16g1596 16 40787224 40790087 Ahy12g3088 12 120340269 120343799 PCT
Ahy16g1596 16 40787224 40790087 Ahy2g2671 2 102742344 102745874 PCT
Ahy12g3088 12 120340269 120343799 Ahy16g1596 16 40787224 40790087 PCT
Ahy2g2671 2 102742344 102745874 Ahy16g1596 16 40787224 40790087 PCT