Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1593 ATGGCAACTCAGCAACAAGAACAAGACTTTCCAATGCACAAAGAACAAGTTGATGGTATCACTACCACTGCTACCGTAGCTCACACTGCAATTCATAAGGGTGTAGAATCAAGTGAAATAACTGAACTACCTAGTAGACAACATGGAAGAAGGCAAAATCTTATGTTGGAGATACCTGCAAGAAATCTTGATGAAGCAAGAGAGGAATTCTTGAGAATTAACATGCCTTCTACAAGTCCTGCTTTCTCCAGTATCAATGAGTTACAACCAAAAAATAAATCAAATATTAAGGCCCTTATTCCCAAACTTAGCTTTAAGTTAGGGAACACTGAAAAGGCTTCCATTCTAGCACTTGAAGGTTCTTCCACAGAGGTGCCGAAAAAGCCTATGATTTCGAGGACATTATCTCTTACAAAGTTGATCACACCTAGAGGGAAGAAGATGTCATCTTTACCCGTGACACCAATTGGAGGAAACACAACCAATATGACAACATATGTGAGAAAAGGACAGCAATCATCGATCCATCGTTCGCGGTCAGTTCCTGCACTTAACAAAGATGGGAACACATCAGTAGGTGTGATGCTGCGCATAGTTCCTACTACGCCACGGTTAGCTGGTAGCGCTGCCACAACATCTATGAAATCTTCACCTGACATTACTGTTGAGAATGAGGATGGAGAGGACATTCCTGAAGAAGAAGCTGTGTGTAGAATATGTTTGATTGAACTTGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGGGAACTAGCATTGGCGCACCAAGAATGCGCGGTTAAATGGTTCAGGATCAAAGGTAACAGAACATGTGATGTGTGCAAGGAACAAGTTCAGAACCTACCTGTCACTCTTTTACGAATTGCGAGTACTCATTCACCAAACTTCTTGATAAGTAGCCAAGGTCAGCAATACAGGGTTTGGGAAACTGTTCCAATTCTTGTGGTTATCAACATGATGGCTTACTTCTGTTTTGTTGAGCAGCTTCTTGTTTCAAATATGGGGTCTGGTGCCATTGCAATATCTCTCCCATTTTCTTGTATATTAGGCCTTCTTGCAAGCATGACATCAACAACAATGGCGAGGAGAAAACATGTCTGGCTTTATGCGATTGCCCAATTTGTTATGGTGTTTCTTGCTGGTCGTCTTTTCTATTCACTGCTTCATGTGCAAGCAGTGCTATCTATGCTACTTGCTACATTTACTGGGTTTGGAGCTGTAATGTGTGTAGCCTCTGTTCTGTTTGAGTTTCTGAAATGGAGGAGAAGATGGTTTGCTCAGTTGAATCAGCATCAGCTTGGTTCCCAAGAGGTGGCTGTACCAACTCATCAATCATCTGCAACAACCACTTAA 1383 0.4201 MATQQQEQDFPMHKEQVDGITTTATVAHTAIHKGVESSEITELPSRQHGRRQNLMLEIPARNLDEAREEFLRINMPSTSPAFSSINELQPKNKSNIKALIPKLSFKLGNTEKASILALEGSSTEVPKKPMISRTLSLTKLITPRGKKMSSLPVTPIGGNTTNMTTYVRKGQQSSIHRSRSVPALNKDGNTSVGVMLRIVPTTPRLAGSAATTSMKSSPDITVENEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFRIKGNRTCDVCKEQVQNLPVTLLRIASTHSPNFLISSQGQQYRVWETVPILVVINMMAYFCFVEQLLVSNMGSGAIAISLPFSCILGLLASMTSTTMARRKHVWLYAIAQFVMVFLAGRLFYSLLHVQAVLSMLLATFTGFGAVMCVASVLFEFLKWRRRWFAQLNQHQLGSQEVAVPTHQSSATTT* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1593 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 292 IPR013083 -
Ahy16g1593 460 PANTHER OS02G0165000 PROTEIN 2 458 - -
Ahy16g1593 460 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 458 - -
Ahy16g1593 460 CDD RING_CH-C4HC3_MARCH 237 285 - -
Ahy16g1593 460 SUPERFAMILY RING/U-box 233 288 - -
Ahy16g1593 460 Pfam RING-variant domain 237 284 IPR011016 GO:0008270
Ahy16g1593 460 ProSiteProfiles Zinc finger RING-CH-type profile. 229 291 IPR011016 GO:0008270
Ahy16g1593 460 MobiDBLite consensus disorder prediction 207 227 - -
Ahy16g1593 460 SMART ringv_2 236 285 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1593 Ahy-Chr16 40392466 40396155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1593 222 301 C3H Transcription Factor Family AT2G37950 35.802 4.43e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1593 - - gmx:100789854 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1593 16 40392466 40396155 Ahy16g1593 16 40392466 40396155 ECH