Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1566 ATGCCGCCTAAGCAGCAATCTAAAGCTGATTTAGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAAAATGTTCAGAAATATGTTCAGAACCTCAAGCAATCCGTACAACCCAAACCCGATCCTTCCAAAACCGCTGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGCTGAATGAATTGTTCAAGATAGCTGTTACCCAACCCAAAGTCCCTGTTGGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTCAAGGTTGGACAATGTGCTAAGGGCTTCAAGTGCAAGTTCTCGCATGACTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATCTATAGTGATAAGCGTGATCAGGAAGACACGATGGAGGATTGGGATCAAGAGACTTTGGAGAAGGTAGTGGAGTCGAAGAAAACTGAATACAATCAGAACAAACCAACTGATATTGTATGTAAATACTTTTTGGATGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGTCCCAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCCGGATATGTTTTAAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAAGAGAAAAACTAACAATTGAAGAGGAGATAGAAAATCAGCGTGCTAAAGTGGCAACTACAACTCCTATGACTCCTGAATTATTCATGCAATGGAAGAAGAAGAAAATAGAAGAAAGAGATGCCAATTTGGCTTTACAGCAAGCTGAGAGGGCCAAGAATGACCGTATGAGTGGTCGTGAGCTATTTTTGGCAGATGCTAGCGTGTTTGTGGATGATGCTGAAGCATATGAGAAGTATCAAAGGGAACCCGAATCCGATGACTCTGAACAGAAGGTCAATGGGAATGCTGCTCAAGACGGTCCCAGCACGTCCACAGTTAGTGTTGATGCTGAGGATACTGATGTTGATGTGGATGACGACGACGATGATGAACTGGACATGGATGAGTTGAATGAATTGGAAGCAAGCTTATCAAGGACATCAATCCAAATAAAGGAGTAA 1080 0.4259 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDPSKTAAKKKKEEEKAKDKELNELFKIAVTQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQEDTMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEREKLTIEEEIENQRAKVATTTPMTPELFMQWKKKKIEERDANLALQQAERAKNDRMSGRELFLADASVFVDDAEAYEKYQREPESDDSEQKVNGNAAQDGPSTSTVSVDAEDTDVDVDDDDDDELDMDELNELEASLSRTSIQIKE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1566 359 Pfam DRG Family Regulatory Proteins, Tma46 216 297 IPR032378 -
Ahy16g1566 359 Coils Coil 247 267 - -
Ahy16g1566 359 MobiDBLite consensus disorder prediction 40 64 - -
Ahy16g1566 359 MobiDBLite consensus disorder prediction 324 339 - -
Ahy16g1566 359 Coils Coil 202 229 - -
Ahy16g1566 359 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 359 - -
Ahy16g1566 359 Gene3D - 87 205 - -
Ahy16g1566 359 MobiDBLite consensus disorder prediction 291 339 - -
Ahy16g1566 359 ProSiteProfiles Zinc finger C3H1-type profile. 159 197 IPR000571 GO:0046872
Ahy16g1566 359 MobiDBLite consensus disorder prediction 303 323 - -
Ahy16g1566 359 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Ahy16g1566 359 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Ahy16g1566 359 Gene3D - 206 280 - -
Ahy16g1566 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 359 - -
Ahy16g1566 359 SMART c3hfinal6 159 196 IPR000571 GO:0046872
Ahy16g1566 359 SMART c3hfinal6 88 114 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1566 Ahy-Chr16 37119613 37124686 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy16g1566 DFRP_C 8.50E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1566 - - gmx:100806617 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1566 16 37119613 37124686 Ahy16g1566 16 37119613 37124686 ECH