Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1562 ATGTTGGATCTTAATCTCAACGCCGATTCCGCCTCCGGCATCCAAATGGAAAGTTCTGGAAGCTTCAATTCCTCCCTCGCCAATGCCGACACCGAGGACTCATGCTCCTACGGCGGCGCTGAAGCCGTAGCATACAACTTCGCCATACTCAAGAACGCCTTCGGCGTGGACGGAGACGCTGGAGCTTCCGGAGACGACGGATGTGTACGGACAATCCAGCTTTTTCCGATGATCGGAGCCGGCGATGGTGTTGCAGCTGAGAAGTTACGTGGCTCGTCATCAGTGTTGGAATTTGAGACGAAGGAGGATCGCGGCGGTGGTAGTGCGACGGCGGTGGAGCAGAGAATGGTTCCTCAGAGGGCGCAGCAGGTGAAAAAGAGTCGGCGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTCACATTTTATCGAAGGACTGGACGATGGGAATCGCATATTTGGGACTGTGGGAAACAAGTGTACTTGGGTGGATTTGACACAGCACATGCTGCAGCTAGGGCATATGATCGAGCTGCGATCAAGTTCCGTGGCATTGATGCAGATATCAATTTCAACGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTGCGTAGGCAGAGCACTGGTTTTTCGAGGGGTAGCTCCAAATACAGGGGAGTTACCCTGCACAAATGTGGTAGATGGGAAGCACGCATGGGGCAGTTTCTCGGGAAAAAATATATCTATCTTGGCCTATTCGATAGCGAACTAGAGGCTGCAAGGGCATATGATAGGGCTGCTATAAAGTGCAATGGAAGGGAAGCAGTTACTAACTTTGAGCCCAGCTCATATGAAGGAAAGGTAAATTCTCATGATGAGAATGAAGATAACAGGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCCCCTTCTTTCTCTGAAGAACAAGTCAATAACATTCACAACAATGGGATTGGTTTCCAATTTCAGCCTAGCTGGGATGACATCCCTATTGATAGGAGATTTATGTTTGAGCACTCTGCATCAAGATCACTGAATACTCAGCCACCTCATGGATTCTCCATAGCATCTCAGCATCCTTCTGCTTGGGGCAATACTGATTTCTTTCCCATCTACAAGGAAAGAGCAATAGAGAATATGATGGAAGCCAATCCCTTGCAAAATTGGGCATGGCAAGTCCAAGGTCATTGTGGCGGGGCAACTCCAATTCCACCTGTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACATTAATGCCATCAGCTGCGGATAATCAAATTCATTTTCCAAACAAGACATTCCTCTACCCTAACTTCCCTCCATCGATCGCCAATTCCGGCACCATATCGCCCTTCTACTAA 1401 0.4847 MLDLNLNADSASGIQMESSGSFNSSLANADTEDSCSYGGAEAVAYNFAILKNAFGVDGDAGASGDDGCVRTIQLFPMIGAGDGVAAEKLRGSSSVLEFETKEDRGGGSATAVEQRMVPQRAQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGKVNSHDENEDNRQSLDLNLGIAPPSFSEEQVNNIHNNGIGFQFQPSWDDIPIDRRFMFEHSASRSLNTQPPHGFSIASQHPSAWGNTDFFPIYKERAIENMMEANPLQNWAWQVQGHCGGATPIPPVSAAASSGFPSTLMPSAADNQIHFPNKTFLYPNFPPSIANSGTISPFY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1562 466 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Ahy16g1562 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 461 - -
Ahy16g1562 466 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 461 - -
Ahy16g1562 466 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 CDD AP2 137 195 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 MobiDBLite consensus disorder prediction 119 138 - -
Ahy16g1562 466 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Ahy16g1562 466 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Ahy16g1562 466 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677
Ahy16g1562 466 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Ahy16g1562 466 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1562 Ahy-Chr16 36699782 36703006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1562 71 331 AP2-EREBP Transcription Factor Family AT4G36920 64.029 4.08e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ahy16g1562 AP2 1.00E-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1562 K09284 - gmx:100808212 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1562 16 36699782 36703006 Ahy16g1562 16 36699782 36703006 ECH