LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g1539	ATGGCCAACAACTCGTCGTTTTTGTTTTCCGGCATTCGTTTTGACAGAAAGAAGTTTGGAAACGACATTGCCAGGTTCGGGAAGAACAAAACCACTGATGACGATACCGCCCTCAAGATTACAGACCCTGTTGAACTCAAAACCGAGAAAACGACGGGGGAACAATTCCAACAGAAACCACCTTCTTCGAAGAAGCGGAAGCGCAAGGGAACCTCTTCTGATGCGGTTGAAGGATTCAGTGTATTTAGAAATTCTGCTTCTGCGGCGGAGCCTGTGGATAAATCGAATGATGCAGTGAGGGCTGATGATGAGGCCATTCAGCTGAAGAAGGAACACAATAGGCAACTTGAGCGAGATGCTATATTCAGGAAGAAGAATAACATCCATGTGGCTGGGTATAACGTGCCATCCCCGCTTCAAAGTTTTGATGAATTGAAAACTAGATACAAATGTCCAAGATATTTAATGCGCAATATCACAGAACTTGGATTCAAAGAACCAACTCCAATCCAGAGGCAGGCTATTCCAGTACTTTTGCAGGATCGGGAATGCTTTGCTTGTGCACCTACTGGCTCTGGAAAAACCTTCGCGTTTGTGTGTCCTATGCTTATGAAACTCAAGGGGCCAGAAACAGGTGCCATTCGCGCTGTTATACTTTGTCATACGCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCCAAGGGAAAAAAGTTTCGTATCAAGTTAATGACTAAACATCTTTCTAGAAATGCTGATTTTTCAAAATTTCCATGTGATATACTTATATCCACGCCACTTCGGTTACGCTTGGCTATCCGGAGGAAGAAGGTTGATCTCAGCAGAGTTGAGTTTCTTGTATTGGATGAATCCGATAAGCTGTTTGAGCCTGAACTGTTTAAGCAGATTGATTCTATTATCAAAGCATGTTCAAATCCCTCAATAATACGCTCACTATTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTATTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGCTTTTTGTGCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAATATTAGAGTGGATGTCATCCATTCTGATCTGTCTCAAGAACAGAGGGAAAATGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCCACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTGCCGCATATATCCACAGGATTGGTCGATCTGGCAGAGCAGGGAGGGCAGGAGAAGCAATTACTTTGTACACGGAGGAAGACATTCCATTCTTGCGGAACGTAGCTAATTTAATGGCAGCATCAGGTTGTGAGGTTCCATCATGGCTCATGGACTTACAAAAAAAGAAGTGGAGAAAACACCGGCCAAAAAGAGATTCAATCTCAACCAAACCAGATATATAA	1614	0.4275	MANNSSFLFSGIRFDRKKFGNDIARFGKNKTTDDDTALKITDPVELKTEKTTGEQFQQKPPSSKKRKRKGTSSDAVEGFSVFRNSASAAEPVDKSNDAVRADDEAIQLKKEHNRQLERDAIFRKKNNIHVAGYNVPSPLQSFDELKTRYKCPRYLMRNITELGFKEPTPIQRQAIPVLLQDRECFACAPTGSGKTFAFVCPMLMKLKGPETGAIRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEFLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIIGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLLFVQSKERAKELYGELAFDNIRVDVIHSDLSQEQRENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITLYTEEDIPFLRNVANLMAASGCEVPSWLMDLQKKKWRKHRPKRDSISTKPDI*	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g1539	537	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	144	172	IPR014014	GO:0003724
	Ahy16g1539	537	MobiDBLite	consensus disorder prediction	25	49	-	-
	Ahy16g1539	537	Gene3D	-	345	522	IPR027417	-
	Ahy16g1539	537	Pfam	DEAD/DEAH box helicase	168	332	IPR011545	GO:0003676\|GO:0005524
	Ahy16g1539	537	SMART	ultradead3	163	360	IPR014001	-
	Ahy16g1539	537	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	175	345	IPR014001	-
	Ahy16g1539	537	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	6	534	-	-
	Ahy16g1539	537	MobiDBLite	consensus disorder prediction	25	76	-	-
	Ahy16g1539	537	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 57	6	534	-	-
	Ahy16g1539	537	SMART	helicmild6	397	478	IPR001650	-
	Ahy16g1539	537	Pfam	Helicase conserved C-terminal domain	376	478	IPR001650	-
	Ahy16g1539	537	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	356	517	IPR001650	-
	Ahy16g1539	537	Gene3D	-	102	344	IPR027417	-
	Ahy16g1539	537	CDD	SF2_C_DEAD	357	487	-	-
	Ahy16g1539	537	CDD	DEADc_DDX52	155	348	IPR044764	GO:0003724\|GO:0005524\|GO:0030490
	Ahy16g1539	537	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	214	496	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g1539	Ahy-Chr16	35131722	35137572	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy16g1539	138	516	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.921	5.44e-53	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy16g1539	K14779		-	gmx:100800969	862.833