Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1495 ATGAGTCAGATGAAGAGAGAAATAGATCAAATAGACTTGGCGAATTGCCTTATGCTTCTCTCTAATAATCCAATAATTAGAAAGAAAAGAAGCCTCAATAACAATGGTGAAGTGGAATTCGAGTGCAAGACATGTAACCGCAAGTTCCCATCGTTTCAAGCACTTGGAGGCCACAGAACAAGCCACAACAAGAAGCCAAAGCTGGAATCAGAACCCAACAACAACGTTGATACTAAGCCGAAGATGCACGAGTGCTCCATTTGTGGCCAAGAATTCTCTCTTGGTCAGGCACTCGGAGGCCACATGAGAAGGCACAGATCACAAAATGATCAACATCAACAACTTGTGTCTTCTATGAATGAGATTAAACATGTTGTTGCTAAAGTTCCGGTTTTCAAGAGATCTAATAGTCTAAGGGTTAGTTGCTTGGACTTGAACCTAACACCATTGGAGAATGATTTGAAGGTGCTCTTTGGAAGTATTACTCCTAATAATAAGCTTCATGCCTTAGTTTGA 516 0.407 MSQMKREIDQIDLANCLMLLSNNPIIRKKRSLNNNGEVEFECKTCNRKFPSFQALGGHRTSHNKKPKLESEPNNNVDTKPKMHECSICGQEFSLGQALGGHMRRHRSQNDQHQQLVSSMNEIKHVVAKVPVFKRSNSLRVSCLDLNLTPLENDLKVLFGSITPNNKLHALV* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1495 171 MobiDBLite consensus disorder prediction 53 77 - -
Ahy16g1495 171 MobiDBLite consensus disorder prediction 62 77 - -
Ahy16g1495 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Ahy16g1495 171 PANTHER ZINC FINGER PROTEIN ZAT5 10 164 - -
Ahy16g1495 171 SUPERFAMILY beta-beta-alpha zinc fingers 40 105 IPR036236 -
Ahy16g1495 171 SMART c2h2final6 83 105 IPR013087 -
Ahy16g1495 171 SMART c2h2final6 40 62 IPR013087 -
Ahy16g1495 171 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 164 - -
Ahy16g1495 171 Gene3D Classic Zinc Finger 33 120 - -
Ahy16g1495 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Ahy16g1495 171 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Ahy16g1495 171 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Ahy16g1495 171 Pfam C2H2-type zinc finger 83 108 - -
Ahy16g1495 171 Pfam C2H2-type zinc finger 40 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1495 Ahy-Chr16 32782158 32782868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1495 2 159 C2H2 Transcription Factor Family AT2G37430 47.619 1.40e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g1495 zf-C2H2_6 5.10E-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1495 - - gmx:100527151 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1495 16 32782158 32782868 Ahy6g1353 6 21192775 21193503 hybridization
Ahy16g1495 16 32782158 32782868 Ahy12g1166 12 31571669 31572379 PCT
Ahy16g1495 16 32782158 32782868 Ahy2g1054 2 29704941 29705656 PCT
Ahy12g1166 12 31571669 31572379 Ahy16g1495 16 32782158 32782868 PCT
Ahy2g1054 2 29704941 29705656 Ahy16g1495 16 32782158 32782868 PCT