Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1484 ATGATGGCGTTCTTCAGTGGAGCTCAACGATTTCTTCGCCAGTCTTCTTCAGTTGTGGCCTCCCACTTCACCTCTACTCGTTTCACTTCGACTCTTACTTCCCCAAAACTCTTCGTCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGCTTGAAGCAAAGGTTATAATGGATAGAGCCTCTGGACGGTCAAAGGGATACGCATTTGTAACTTATGCGACCATAGAAGATGCTGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCTAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGGAGCTGGTTTCACGGTTAACAAGACAATTGGATGGTGTGGTTGA 426 0.4648 MMAFFSGAQRFLRQSSSVVASHFTSTRFTSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLLEAKVIMDRASGRSKGYAFVTYATIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSGAGFTVNKTIGWCG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1484 141 PANTHER NUCLEOLAR PROTEIN 8 2 141 - -
Ahy16g1484 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Ahy16g1484 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Ahy16g1484 141 MobiDBLite consensus disorder prediction 112 133 - -
Ahy16g1484 141 Gene3D - 21 135 IPR012677 -
Ahy16g1484 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 141 - -
Ahy16g1484 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Ahy16g1484 141 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1484 Ahy-Chr16 32003191 32006599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1484 37 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.559 1.97e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1484 - - gmx:100306326 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1484 16 32003191 32006599 Ahy6g0004 6 103177 106318 hybridization