Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1478 ATGGCGGCATCGCGGCGGTTGCGGGAACTGCAATCCCAGGCGGCGAACAAGATCTGCGTCGACTGCTCTCAGAAGAACCCACAGTGGGCCTCCGTCTCCTACGGCGTATTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTGGGCGTCCACATCTCCTTCGTCAGATCCGTCACCATGGACTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGCGGCAACGACGCCCTCAACGCCTTCCTCTCTCAGTACGGTATTCCAAAGGAAACTGATATTGTCACAAAGTACAACACCAACGCCGCCAAAATCTACCGCGACCGCATCCAGGCCCTCGCCGAAGGCCGTCCCTGGCGCGATCCTCCCGTTGTTAAGGAGGATCTCCGCTCCTCTGCCGGGAAACCTCCCTTGTCGCACACCGGCGGTGGCGGTGGTGGTGGAGGTTGGGATAGCTGGGATAACGATGACGGTTTTGGATCTCGCAATGATATGCGGCGGAATCAGTCGACTGGAGATGTTAGACGGTTCTCTGGTGGCGGCGCCGGTGTAGGTGGTGTGCCGGCGAGGTCGAAATCGACGGAGAATATGTACACGCAGTCGGAATTGGAGGCCTCCGCCGCGAACAAGGAGAGCTTCTTTGCTCGGAAGATGGCGGAGAATGACACGAGGCCTGAGGGGCTCCCGCCATCGCAGGGCGGAAAGTACGTCGGGTTCGGATCGAGCCCTGCCCCTTCGCAGAGGAACATAAACCCTCAAAACGACTATCTCTCTGTCGTTTCGCAGGGGATTGGTAAATTATCATTGGTTGCTGCATCTGCCGCTCAATCTGCTGCTAGTGTTGTTCAGGCAAGCACCAAGGAAATCACTGCTAAGGTAAAGGATGGTGGGTATGATCACAAGGTCAATGAAACTGTCAATGTTGTTACTCAGAAGACATCTGAGATTGGCCAAAGGACATGGGGCATTATGAAAGGTGTCATGGCATTGGCTACACAGAAGGTGGAGGAGTTCGCTAGAGATAACCCAAATTGGAAGCCTGAAAATTGGCAAGCAAATGATATTGATAGAAATGGTTCCTATCAAGAGTACAATCAAGAGAATAGAGGCTGGAATTCTTCTTCTACCAGGGGAGGACAACCATCATCAGGTAGTCAATCTAATAAGTCTAGTTCTTGGGATGAGCAAGATTCTAGGAAGCAAGTACCAGCTCGTCCATCTTCACGTGAACAATATGCTGGTACCAAAAACACAAGCTCTTGGGATGATTGGGACCAAAATGATACTAGGAAGCAGGGACCAGCTAAGGTATCAGCTTCTCCATCACCAGTTGCACAGTATGGTGGTACTCACAACACAAGCTCTTGGGATGATTGGGACCAAAAAGATACTAGGAAGCAAGAACCAGCTAAAGTATCTGCTTCTCCGTCATCAGTTGGACAGTATGGAGGTACTCAAAACACCCACACCAGCTCCTGGGATGATTGGGACCAAAAAGATACTAGGAAGGAAGAAGCAGCTAAAGGATCAACTCCTCAGAAAAGTGATGGTTGGGCTGGCTGGGATGATTCTAAAGATGATGGATTTGATAATTTCTATGGGAGTTCAGCTAATAATAAAGCTGCTGGTCATAATGGAAAGGCAGATTCAGCCTGGACGGGAGGAGGCTTTCTCTGA 1680 0.5143 MAASRRLRELQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDALNAFLSQYGIPKETDIVTKYNTNAAKIYRDRIQALAEGRPWRDPPVVKEDLRSSAGKPPLSHTGGGGGGGGWDSWDNDDGFGSRNDMRRNQSTGDVRRFSGGGAGVGGVPARSKSTENMYTQSELEASAANKESFFARKMAENDTRPEGLPPSQGGKYVGFGSSPAPSQRNINPQNDYLSVVSQGIGKLSLVAASAAQSAASVVQASTKEITAKVKDGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMALATQKVEEFARDNPNWKPENWQANDIDRNGSYQEYNQENRGWNSSSTRGGQPSSGSQSNKSSSWDEQDSRKQVPARPSSREQYAGTKNTSSWDDWDQNDTRKQGPAKVSASPSPVAQYGGTHNTSSWDDWDQKDTRKQEPAKVSASPSSVGQYGGTQNTHTSSWDDWDQKDTRKEEAAKGSTPQKSDGWAGWDDSKDDGFDNFYGSSANNKAAGHNGKADSAWTGGGFL* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1478 559 SUPERFAMILY ArfGap/RecO-like zinc finger 5 115 IPR037278 -
Ahy16g1478 559 CDD ArfGap_ArfGap1 3 117 - -
Ahy16g1478 559 MobiDBLite consensus disorder prediction 366 559 - -
Ahy16g1478 559 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Ahy16g1478 559 MobiDBLite consensus disorder prediction 471 493 - -
Ahy16g1478 559 Pfam Putative GTPase activating protein for Arf 5 101 IPR001164 GO:0005096
Ahy16g1478 559 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 485 559 IPR044519 GO:0005096|GO:0016192
Ahy16g1478 559 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Ahy16g1478 559 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 429 - -
Ahy16g1478 559 MobiDBLite consensus disorder prediction 494 511 - -
Ahy16g1478 559 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Ahy16g1478 559 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Ahy16g1478 559 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Ahy16g1478 559 MobiDBLite consensus disorder prediction 366 393 - -
Ahy16g1478 559 MobiDBLite consensus disorder prediction 409 423 - -
Ahy16g1478 559 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 485 559 - -
Ahy16g1478 559 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 429 IPR044519 GO:0005096|GO:0016192
Ahy16g1478 559 MobiDBLite consensus disorder prediction 118 196 - -
Ahy16g1478 559 MobiDBLite consensus disorder prediction 158 172 - -
Ahy16g1478 559 MobiDBLite consensus disorder prediction 221 250 - -
Ahy16g1478 559 SMART arf_gap_3 4 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1478 Ahy-Chr16 31846677 31850505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1478 5 138 C2H2 Transcription Factor Family AT4G21160 38.971 7.60e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1478 K12492 - gmx:100801306 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1478 16 31846677 31850505 Ahy16g1478 16 31846677 31850505 ECH
Ahy16g1478 16 31846677 31850505 Ahy6g0010 6 202232 206117 hybridization