Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1394 ATGAAATCTGAATTCCCAAGTCTTTCACGCACAAACAACTCAACAGAACAAACCGCCAGAATGGATGCTTCTAGAACTTCAAGCAGCACCGGCAACAAGAGTAACAGCACCAAGCTGCTTAATCCATGGATGCTCCATTTCCAGAAGCTCGCTCTTGAACTCAAGTGCCCTCTCTGTTTGAGCTTGTTCAAGAGGCCGGTTTTGCTACCCTGCAACCACTTATTCTGCAATTCGTGTTTGGCGGATTTCACAACGTCTGGTTCCGAATGTGTTGTCTGCAATGCGAAGTATGCTCAATCAGATATAAGGCATGTGCCTTTTGTGGAAAACGTGGTAGGGATTTATAGGAGCTTGGATGCAACCTTTTCTGCTAGTTTGTTTAAGCAACATTCTTCTGATGTGAGGGTTTTGGAGCCATGCCAAGGGTTACAAAATTCAGTTCATAGGAGCAAGGATACTGATAATGTTGGGGCTGGCAAGAATCAGAAACGGAAGATGAGTGGTCTTGCGGTGCATGATAAGGGCGAGGAGATTGAGGTGTATTCTGGGGGGCAGGTTGAGAATCCAAGGCGGTCTTCCCAGATGAAAATTGAGGGTCGTGAAGACTCTGGGGTTGTTGAAATGGATGTGAATCAAGGGACGCAATCAGCACCAGATAGTCCACCATTTTGTGACACCAAGGGCTCAGAGAATGACTGCAGTGATCAAGATAGCGAGCATCTTTTGCCTTCTGGGGCATTGGAAAATTCCTCATCGAAAAGAGCAAGTACAGGAAATGGAAATTTGAAGGAAAGAATGACACAACTGAGGTCTGAAAGTTCAGCCTCTGAAACGGAGGGTCTTACAAGAGAGCTCAAGAGGCAGAAAAACCTTACCCATGGTAATGATCAACTCAGAACTGAAAAGGACCCTGGTGCCGTGATGCTTGCTAATGTAGATGACTCTTATTCAAGTACATGTTCATTTTGCCAGTCCTCAAAAATCTCAGAGGCTACTGGACCAATGCTGCATTGTGCAAATGGGAATTTGGTTATTGGTGATGCAGCAAAGCAACCAAATGTCATCCATGTACACAAAGTTTGCAGTGATTGGGCACCACAAGTTTACTTTGTTGGTGACACTCTTAAGAATGTGAAGACAGAACTGTCAAGGGCAGCAAAGCTTAAATGCAGCAAATGTGGCTTAAAGGGAGCTGCACTTGGATGCTATGTCAAATCCTGCAGAAGAACTTATCATGCTCCTTGTGCAATGGATGTCTCAAATTGCCGTTGGGATTATGAGGGTTATCTTTTGCTTTGTCCTGGTCATTCTCATGTGAAATTTCCTAGTGAGAAATCCAAGTCTAGGAAACAAACAACTGATAAGCATCCCACTTCATCTCACCTGCCATCTCAATGTTCAAACGATCTGGGATGTTCAAAGGATGAAGATAAAAAATTGCTTTTTTGTGGATCTGCTTTATCAACCGAGGAAAAGATACTTCTGATAAATTTTGCAAGCAAGATTGGTGCTAAAGTTACCAAGACTTGGACTTTAGAAGTCACCCATGTGATTGCAGCTACTGATGAAAATGGAGCATGCTCTAGGACACTAAAAGTTCTTATGGCAATTCTAAATGGAAAATGGGTTCTCAAAATGGATTGGGTAAAAGCAAGCATGGAAGAGATGAATCCTCTTGGAGAAGAACCATATGAGATCACACTTGACAACCAAGGGTGTCACGGTGGCCCAAAAGCTGGCAGACTCAGGGCAATGGTCAATGAGCCAAAGTTATTTACTGGCTTAAAGTTTTATTTGTCCGGAGATTATGTGACAACATATAAGGAAGATATTGAAGAATTAATTGAAGTGGGAGGAGGTGCTGTTTTGAGAAGCAAAGAAGAATTGGAAGCAAAAAAGCTTGAATTCGAAGGGGTTCCTTCGAAGTTCCTTGTTGTTTACAACCTTGATCCTCCACAGGGATGCAAGTTAGGAGAGGAAGTTTCGATTATTTGGCAAAGAATGAATGATGCAGAGGAACTAGCATCTAGTACTGGTTCTGAAGTCATTGGTCACACGTGGATTCTGGAGTCAATTGCAGCATGTAAACTTCAGCCTTTTGTTATCTAA 2109 0.4291 MKSEFPSLSRTNNSTEQTARMDASRTSSSTGNKSNSTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADFTTSGSECVVCNAKYAQSDIRHVPFVENVVGIYRSLDATFSASLFKQHSSDVRVLEPCQGLQNSVHRSKDTDNVGAGKNQKRKMSGLAVHDKGEEIEVYSGGQVENPRRSSQMKIEGREDSGVVEMDVNQGTQSAPDSPPFCDTKGSENDCSDQDSEHLLPSGALENSSSKRASTGNGNLKERMTQLRSESSASETEGLTRELKRQKNLTHGNDQLRTEKDPGAVMLANVDDSYSSTCSFCQSSKISEATGPMLHCANGNLVIGDAAKQPNVIHVHKVCSDWAPQVYFVGDTLKNVKTELSRAAKLKCSKCGLKGAALGCYVKSCRRTYHAPCAMDVSNCRWDYEGYLLLCPGHSHVKFPSEKSKSRKQTTDKHPTSSHLPSQCSNDLGCSKDEDKKLLFCGSALSTEEKILLINFASKIGAKVTKTWTLEVTHVIAATDENGACSRTLKVLMAILNGKWVLKMDWVKASMEEMNPLGEEPYEITLDNQGCHGGPKAGRLRAMVNEPKLFTGLKFYLSGDYVTTYKEDIEELIEVGGGAVLRSKEELEAKKLEFEGVPSKFLVVYNLDPPQGCKLGEEVSIIWQRMNDAEELASSTGSEVIGHTWILESIAACKLQPFVI* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1394 702 SUPERFAMILY BRCT domain 480 567 IPR036420 -
Ahy16g1394 702 ProSiteProfiles BRCT domain profile. 476 566 IPR001357 -
Ahy16g1394 702 SUPERFAMILY BRCT domain 591 699 IPR036420 -
Ahy16g1394 702 SMART ring_2 56 93 IPR001841 -
Ahy16g1394 702 Gene3D BRCT domain 476 582 IPR036420 -
Ahy16g1394 702 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 37 700 - -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 243 276 - -
Ahy16g1394 702 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Ahy16g1394 702 ProSiteProfiles Extended PHD (ePHD) domain profile. 317 437 IPR034732 -
Ahy16g1394 702 Pfam BRCA1 C Terminus (BRCT) domain 479 552 IPR001357 -
Ahy16g1394 702 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 37 700 IPR031099 GO:0006281|GO:0006974
Ahy16g1394 702 ProSiteProfiles Zinc finger RING-type profile. 56 94 IPR001841 -
Ahy16g1394 702 SMART BRCT_7 472 556 IPR001357 -
Ahy16g1394 702 SMART BRCT_7 589 695 IPR001357 -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 1 35 - -
Ahy16g1394 702 Pfam PHD-like zinc-binding domain 358 436 - -
Ahy16g1394 702 SUPERFAMILY RING/U-box 53 116 - -
Ahy16g1394 702 Pfam Zinc finger, C3HC4 type (RING finger) 53 97 - -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 211 299 - -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 147 168 - -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 440 465 - -
Ahy16g1394 702 CDD BRCT_Bard1_rpt1 480 555 - -
Ahy16g1394 702 ProSiteProfiles BRCT domain profile. 587 692 IPR001357 -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 440 456 - -
Ahy16g1394 702 MobiDBLite consensus disorder prediction 277 299 - -
Ahy16g1394 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 439 IPR013083 -
Ahy16g1394 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 126 IPR013083 -
Ahy16g1394 702 Pfam BRCT domain, a BRCA1 C-terminus domain 589 699 IPR001357 -
Ahy16g1394 702 Gene3D BRCT domain 589 695 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1394 Ahy-Chr16 27895184 27900682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1394 510 623 Core DNA Replication Machinery Family AT4G02110 30.833 7.22e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1394 K10683 - gmx:100784883 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1394 16 27895184 27900682 Ahy6g0071 6 1037021 1042427 hybridization