Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1368 ATGTGGTATGCAGAGGTGGCAAAGCTAAACGCAAATGAATGGTACTTCTTCAGCTTCAGAGACCGGAAATATGCGACGGGGTTCAGAACGAACAGAGCGACGACAAGTGGTTATTGGAAAGCAACGGGGAAGGATCGAACGGTGCAGGATCCACTGACACAAGAGGTTGTAGGGATGCGCAAGACTCTGGTGTTCTACCGGAACAGAGCTCCCAATGGCATCAAAACTGGCTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGCCAAACTTATCATGTATGATTCCATTTCCACACATCATCAATCATCAAACCCTATGGCATTGGTATCAACCCATCATTTGAACCCCATCAACAACCATAATAACACTTATCATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGATGATAGTCAAACAAATAACGCCAATAATAATAATAGCAGTGTTACTCAAATTAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATGGTGGTGTGCCCTCATCAGACTTCCAGGTCGACAATAATAATAATCGTAACAACAACAATAATAATAATATTGCATTGCTATAA 678 0.4248 MWYAEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPLTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSAKLIMYDSISTHHQSSNPMALVSTHHLNPINNHNNTYHAMNNFLHHFSSSRDDSQTNNANNNNSSVTQISPKGYDGYGFIWDHMDLEDGGVPSSDFQVDNNNNRNNNNNNNIALL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1368 225 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 214 - -
Ahy16g1368 225 MobiDBLite consensus disorder prediction 157 180 - -
Ahy16g1368 225 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 214 - -
Ahy16g1368 225 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677|GO:0006355
Ahy16g1368 225 MobiDBLite consensus disorder prediction 201 225 - -
Ahy16g1368 225 MobiDBLite consensus disorder prediction 204 225 - -
Ahy16g1368 225 SUPERFAMILY NAC domain 6 104 IPR036093 GO:0003677|GO:0006355
Ahy16g1368 225 Gene3D NAC domain 3 110 IPR036093 GO:0003677|GO:0006355
Ahy16g1368 225 Pfam No apical meristem (NAM) protein 7 85 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1368 Ahy-Chr16 27133146 27135458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1368 5 107 NAC Transcription Factor Family AT1G56010 62.727 6.55e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy16g1368 NAM 7.40E-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1368 - - ahf:112754075 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1368 16 27133146 27135458 Ahy6g0088 6 1217789 1221816 hybridization
Ahy16g1368 16 27133146 27135458 Ahy12g0936 12 19289911 19296469 PCT
Ahy16g1368 16 27133146 27135458 Ahy2g0800 2 14868434 14874831 PCT
Ahy12g0936 12 19289911 19296469 Ahy16g1368 16 27133146 27135458 PCT
Ahy2g0800 2 14868434 14874831 Ahy16g1368 16 27133146 27135458 PCT