Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1345 ATGATGATCTCTCTTATTATTACCGTCACCTTCCTCATCGCCACCACATTGGTTGCTGTTCCCGACTCGTTTCACCACCGCACGAACCAAAGGCTTCTACAAAACTACTACTACTACCATCATGGTGATGGTGGGATGAAGAAGAAAAAAAAGGAGGAGGAGAGTGAAAATGAAAGTGATCGCTGTGCAGTGTGTCTATGCCAAGTGCTGTCGAAGTCAAAGTCAAAGGGGGAACGGGTACGGTGGCTACCAGGATGCAACCACCAATTTCATGCAGACTGCATCGGAGCATGGCTGAAGGAGCACAGCACGTGCCCTCTTTGCAGGAGCCACGTGACTTCCAGTAAGACTACCGAAACTGATCACAAAGTAGTGTTGTTATTGCGGCATATCATAAATGTCATCAACATCTTGATTCAGAGATTCTCCGACGTGCTGATAGCAACCGCCTATACATGA 459 0.4728 MMISLIITVTFLIATTLVAVPDSFHHRTNQRLLQNYYYYHHGDGGMKKKKKEEESENESDRCAVCLCQVLSKSKSKGERVRWLPGCNHQFHADCIGAWLKEHSTCPLCRSHVTSSKTTETDHKVVLLLRHIINVINILIQRFSDVLIATAYT* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1345 152 Pfam Ring finger domain 61 109 IPR001841 -
Ahy16g1345 152 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 54 121 IPR044675 -
Ahy16g1345 152 ProSiteProfiles Zinc finger RING-type profile. 62 109 IPR001841 -
Ahy16g1345 152 SMART ring_2 62 108 IPR001841 -
Ahy16g1345 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 117 IPR013083 -
Ahy16g1345 152 PANTHER RING-H2 FINGER PROTEIN ATL2 54 121 - -
Ahy16g1345 152 SUPERFAMILY RING/U-box 48 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1345 Ahy-Chr16 26308384 26309270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1345 61 118 C3H Transcription Factor Family AT1G53820 50.000 2.84e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1345 - - aip:107646167 305.834