Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1343 ATGAGTGACTCGTCGGTGCCAAGTGACAAGTTGGGTGAGTCTCCGGCGGTTGAGTTAACGGGCAAGATCATGGTGGTGGCCGTAATAGTCTTGTTCATGGTGGTTGTGTTCGTGCTGTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGGAGAGAGCAACATTCCTCAACCCAGAAGGCGGCGGCGGCGCTTTGTGTTTGCTCCTGGTCAAGACCCGGCCAGCTCCGGCGCTGTCCGAAGAGGCCTTGAGCCTTCTGTGCTGAGATCCCTGCCGGTGTTGGTTTTCCAGCCGCAAGATTTCAAGGAAGGTATGGAATGTGCGGTTTGCCTTTCGGAGGTTGAAGAGGGGGAAAAGGCGAGGTTGTTACCAAAGTGCAATCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCCACTTGCCCCCTCTGCAGAAACCCTGTGACCTCTGCCACCGAATCTTCTTCTGATGCAGCTTTCCCCACAAATGTCTTCGTTTGGGGGAACCAGGCCCAAGTGAGTTCTTCTAATGGTGCTTCTTTGGAAGAAACTACTACTTCTTCGTCCTCGTCCTCTTCAGCTAGCAGCAGTGACAGAGTTCACCATCATGGCGGTGGATCGTTGGTGATTGATATACCAAGCGAGATCACTTCATCTTCTGCAAGCAGGTTTGCAGAAGAAGATGAGATGAAATCTCCCATTACAGGGAGACTGAAATCATTGAAGAGGCTGTTAAGCAGGGACAGGAGGATGAATCCTTCTAGTCCACGTTCTATAGACCTTGAACATGCAACGGGATCAGGGCAGAGCTCTAGCTAG 837 0.5137 MSDSSVPSDKLGESPAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWSIGESNIPQPRRRRRRFVFAPGQDPASSGAVRRGLEPSVLRSLPVLVFQPQDFKEGMECAVCLSEVEEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSATESSSDAAFPTNVFVWGNQAQVSSSNGASLEETTTSSSSSSSASSSDRVHHHGGGSLVIDIPSEITSSSASRFAEEDEMKSPITGRLKSLKRLLSRDRRMNPSSPRSIDLEHATGSGQSSS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1343 278 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 263 IPR044675 -
Ahy16g1343 278 Pfam Ring finger domain 108 151 IPR001841 -
Ahy16g1343 278 SMART ring_2 109 150 IPR001841 -
Ahy16g1343 278 MobiDBLite consensus disorder prediction 228 262 - -
Ahy16g1343 278 MobiDBLite consensus disorder prediction 182 206 - -
Ahy16g1343 278 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Ahy16g1343 278 MobiDBLite consensus disorder prediction 264 278 - -
Ahy16g1343 278 MobiDBLite consensus disorder prediction 182 278 - -
Ahy16g1343 278 CDD RING-H2_EL5_like 108 151 - -
Ahy16g1343 278 SUPERFAMILY RING/U-box 89 158 - -
Ahy16g1343 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 161 IPR013083 -
Ahy16g1343 278 PANTHER RING-H2 FINGER PROTEIN ATL3 4 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1343 Ahy-Chr16 26251006 26252456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1343 18 258 C3H Transcription Factor Family AT1G53820 38.851 3.43e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1343 - - adu:107491762 474.167