Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1312 ATGAAGTCCCTCACAGTCACCGCCAGTGTTTTGAACCCCACAAATCAACCACCAGTCAACAAACTCCACTTCTTCCACTCTCACTCTCTCTCATTCTCACTCTTCTTCCCACACACATCATCAAACCTAAAATGCCACCATCAAAAGCCAATCATCACAGCATGCTCTTCTTCTTCTTCAATCGAAATCGACATGGTGAAGAACAACCAAGGAATCTACACCCCTAAGCACCCCAAAGTAGTCGTCCTCTGGGACCTCGACAATAAGCCCCCACGAGGACCCCCATACGACGCCGCACGCTCCCTCACACGCCTCGCAACTCACTTTGGCCACATCGTCGACATCTCTGCCTACGCCAATCGCCACACATTCATCCACCTACCGCAGTGGGTCCTACAGGATCGCCGCCAGAGAAAGCACCTCGACGTGCTGGAACGGAAGGGCCTGGTGGTGCCATCGGAGCCCTACAGGTGTTCCGTCTGCGGGAAAAAGTGTCGCACCAATCTGGATCTGAAGAAGCATTTCAGGCAGTTGCATGAACGAGAGAGGCAGAAGAAGCTTAATCGGATGAGGTCCTTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTCAGGGGAATGAAAAGTATAATGAGGCTGCTAGGTCTCTCATTAGGCCCAAGGTTGGTTATGGGCTAGCTTCAGAGCTGAGGAGGGCTGGGGTATATGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGGATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTCGCAGAGATGATGAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGATAGGGCACTGGGGAGGCAAGCCGATTTGTGGTTTCCTTGGATTGATGTTGAGAATGGGAATGTTTCGGAGAAGGATCTGGTGATCGAGAAGAACAGGAGTAGGGCTCAAAGGGACGGTTTTGTCGTGGAAGAAGATGATGATGGGTTTTTTTCATTGTCGAGATTTGACTGTGGTGGTGGTCATGGGAGTAGTGATTTGGATGAGCTTGTAGATGAACTTGCAGCAGTGAGGACTGATTTTACTGCGGCAATTTCAGATGAGGATGAAGACGATTATATGTTGGGGAGTAGTGAGGATGAGTACATAGAAGATTATGATGAAGATAGTGATCAAGAAGATGATGGGTTCTATTGA 1248 0.4944 MKSLTVTASVLNPTNQPPVNKLHFFHSHSLSFSLFFPHTSSNLKCHHQKPIITACSSSSSIEIDMVKNNQGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRLATHFGHIVDISAYANRHTFIHLPQWVLQDRRQRKHLDVLERKGLVVPSEPYRCSVCGKKCRTNLDLKKHFRQLHERERQKKLNRMRSLKGKKRQRFKERFIQGNEKYNEAARSLIRPKVGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFAEMMRRARERELGTVVVGDWDRALGRQADLWFPWIDVENGNVSEKDLVIEKNRSRAQRDGFVVEEDDDGFFSLSRFDCGGGHGSSDLDELVDELAAVRTDFTAAISDEDEDDYMLGSSEDEYIEDYDEDSDQEDDGFY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1312 415 Gene3D - 73 313 - -
Ahy16g1312 415 Coils Coil 176 196 - -
Ahy16g1312 415 MobiDBLite consensus disorder prediction 385 415 - -
Ahy16g1312 415 SMART c2h2final6 156 179 IPR013087 -
Ahy16g1312 415 SUPERFAMILY beta-beta-alpha zinc fingers 153 184 IPR036236 -
Ahy16g1312 415 PANTHER OS06G0166200 PROTEIN 50 373 - -
Ahy16g1312 415 CDD PIN_LabA-like 166 296 - -
Ahy16g1312 415 PANTHER - 50 373 - -
Ahy16g1312 415 ProSitePatterns Zinc finger C2H2 type domain signature. 158 179 IPR013087 -
Ahy16g1312 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1312 Ahy-Chr16 25232657 25237294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1312 20 351 C2H2 Transcription Factor Family AT5G52010 65.868 1.71e-157 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g1312 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1312 - - adu:107495834 743.806