Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g1302 ATGGAGGGTGGGAATAGGGTTCCGGGGTCAGGGGAGGGTGACCCTTCTTACTGGCTGGACGCCTGTGAGGACATATCATGCGATTTCATTGATTTTGATGTGTCTTCAATTGTGTCTGAGCAGCCTGACAACGCTTCCAACCAGGATTTCTTTGGTGGGATTGATCGAATCCTTGATAGCATAAAGAATGGTGGTGGCCTCCCGCTTGATGCCGAATCCAATTCCAATGCTCCTGCTGAACCAGCTGCAGCAGCAGCACCACCACCACCACAACAACCATGGTTGCCTCATGATGCCCCTCCTTCTGCAGCAGCACACTCCAAGCTGCAGCACTCTCTGACTCCACTTCCTGCCTCCAATGGTTCCGCGAAGAATGAATTGGTTGCAGAGAAGCATGGTCGCACGGCAGATGCTTTTCAGCATCCACGGGCTGAAACTAACGGCTGCAATAAGTTGTTGAATGGTAATGATGAAGGGAGAGTTTTGGTTGGTTGTTTTGTGGAAAACGGAGGCCTGAGCAGAGGGCGCGATCAGTTGAGGGAATATGATGTTGATGGTGAAGAGAGATACTGCAAAAGGGCGAGGCTTGGCAACTATAAGAATGACAGACATTATTCTGGTAGAGTTAATTATCAATTCAAGGAGAAAGAGAGATGTTTTAATAGGAAGAGGCCTCGAGATAGTAGAGATGAGATTGATGTTAGGAGGGACAAAGATAGTAGCAGGAAAAAAGAACATTATGGCAATTGTGGCTGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAGCAGAGGGGTTACTGGGAGAGGGATAAATTGGGTTCTAATGACATGGTTTTTCGCATGGGCACTTGGGAAGCCGATAGGGATCGAGAAGAGAAAATGGCTAATGACACAAAACAGGAAAGCAATGGAAAGCTTGACAAGACATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAGAAAGCTAGACAGTATCAATTGGATGTTCTTGAGCAGGCAAAGACGAAGAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAGACCCTCATTGCAGTTCTTCTCATCAAAAGTATACACGAGAGTTTGCAAAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTCCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGCTATCAAGTGGGTCATTACTGTGGAGAAATGGGTCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACTAAACATGTCTTAGTCATGACAGCTCAAATTCTTCTGAACATCTTGAGGCATAGCATCATTAAAATGGAAGCAATCAATCTCCTAATTCTTGATGAGTGCCATCATGCTGTTAAGAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCACACAACTCCTAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTAAACTTGAAGGGAGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGAAATCTTGAGAGCAAGCTGGATTCAATAGTTTGTACCATTAAAGATCGCAAGGAGCTGGAGAGACATGTGCCCATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCCGGCAGTTTATGTTATCTACATGAGCAAATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCGAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGCGCAAAGGAGGAGCTGCGACAAGTATATGGTGTTTCTGAGAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGGCAGTGGTGTGCATTTAAGGTTGCACAATCTTTTCTAGCAGCTTTGCAGAATGATGAAAGGGCTAACTACCAACTAGATGTCAAGTTTCAGGAATCTTATCTTAGCAAAGTTGTCTCTCTTCTGAAATGTCAGTTGTCAGAGGGTGCAGTTTCTGACAAACATGCTGAAGTTGATGACTCAAAGCATGAAACAACTTGCAATGGGACTGAACCTGAAGAGATTGAGGAAGGAGAACTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCAGCTGTGGCTGATGGAAAGGTGACCCCCAAGGTGCAGGCACTCATCAAAATACTACTGAAGTATCAGAACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCCAAGGTCTTTGCAGAGCTCCCATCTCTTAGTTTTGTGAAATGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGAGGGTTACATTGTTAGTTGCTACTAGTGTTGCTGAAGAAGGGCTTGATATCCGGCAATGCAATGTCGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCTAGGGGTCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTTAGGAATGCAAGAAACAGCGAGGAGACCTTACGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGATTGATTTCAGTAGATACCCGACCGGGAACAGTTTACCAGGTCAAGTCAACCGGGGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGTTCCCAACTACCAAGCGACAGGTATTCAATTCTTCGCCCTGAGTTTATCATGGAGAAGCATGAAAAACCAGGATGTCCCACTGAATATTCTTGCAAGCTTCAACTACCTTGTAATGCACCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCGGACAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGGGATCCACTTCCAGGGACTGCTAGACACAGGGAGTTCTATCCTGAAGGTGTGGCTGACACACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTACAACAATTCCAAATTGTTTCATCTTTATATGTATTCCGTGGAGTGCGAAAATGTAGGAATTTCAAAGGATCCGTTCTTAACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATCAGTGAGAGTCAGTTGGCGACCTTGAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCTTCTACCACTCCTTGGGATCCCGCAAAAGCATATTTATTTGTCCCAATGATTAGCGATAAGTCTGTAGATCCTGTGAAACAAATTGATTGGTTTCTGGTCGAGACAATAATTGGATCGGATGCATGGAAAAATCCCCTCCAGAAGGCTCGGCCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGAGACAGAAGGGAGTATGGATTTGGAAAATTGCGTCATGGCATGGTGTTTGGGCAAAAAGCACATCCAACCTATGGAATCAGAGGAGCTGTAGCCCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAAACATATCAGTTTGACGACCAAAGGAAAATTGATGATGGCGGATACTTGTACTAACGCAGAGGATCTGGTTGGGAAAATTGTAACTGCTGCACACTCTGGGAAGAGGTTTTATGTTGATTCAATACGTTATGATATGTCTGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTCGAGTACAGTTCATATGCTGATTATTACAAGCAAAAGTATGGGGTTGATTTGATTTACAAGCAACAACCGCTTATAAGAGGGCGTGGTGTGTCATACTGTAAGAATCTTCTTTCCCCTCGATTCGAACACAGTGAAGCACATGAAGGAGAATCTGAAGAATCTCATGACAAAACATATTACGTGTTCCTTCCTCCTGAACTATGCCTAGTACACCCTCTTCCTGGATCACTTGTTCGGGGTGCCCAGAGATTGCCTTCAATCATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAGGAATATGATAAATTATCCTGTGCAGGCTTTGAAGATCTTGGAGGCCTTGACTGCTGCATCTTGTCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTCGTTAGTCGATTTCTTTTCCTAAAATACCCGCAGAAACATGAGGGCCAACTTACTAGGATGAGGCAACAAATGGTCAGCAACATGGTTTTATATCAGTATGCATTAAGTAAAGGCCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCAAGATGGGCGGCTCCTGGGGTACTGCCTGTCTTCGATGAGGATACCAAGGATGGAGAGTCAACTTTATTTGACCAGGATACATCCATTTCTAACACTGAGAGAATGGATTGTCACACTGATGAATATGAAGATGAGCTGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGGGTACTGTCCAGCAAGACACTTGCTGATGTTGTGGAAGCACTCATTGGTGTATATTATGTCCAAGGAGGTAAGAGTGCCGCTAACCACCTTATGAACTGGATTGGCATTCAGATAGAGTTTGATCCTGATGAGATGGACTGTGCAAGAAAGCCTTTCAATGTTCCAGAGAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTGAATATGAAGTTTAAAGACAGGGGGCTTCTGGTAGAAGCCATTACTCATGCGTCCAGACCATCATCAGGAGTATCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCAGTTTTGGACCATCTTATTACCAGGCATTTGTTTTTCACTTACACAAATTTGCCACCGGGACGATTGACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCTCGTGTTGCAGTTAAACACAATCTTCATGTGCATCTCCGACATGGGTCTAGTGCCTTAGAAAAGCAGATCAAAGAATTTGTCAAGGAAGTTCAGGATGAATTGTCAAAGCCGGGATTTAACTCCTTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGCTCCATTTTTCTTGATAGTGGAAGGGATACTACTATCGTTTGGAAGGTTTTTCAGCCTCTATTGCATCCCATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGCTTAGAATACAGAGCAAGTCGTGTTGGCAATCTGGCCACTGTTGAAGTATTCATTGATGGCGTGCAAGTTGGGGCCGCTCAAAATCCACAAAAGAAAATGGCTCAGAAATTAGCTGCCAGAAATGCCCTAGCTGCTTTGAAAGAAAAGGAGGTGGCAAAGAATCAGAAGAATGATGAAAATGGGAAAAAGAATGGAAACCAAACATTTACCAGACAAACATTAAACGATATTTGTTTGCGAAGAAATTGGCCTATGCCATTCTATCGATGTGTGAATGAGGGCGGTCCAGCACATGCGAAGCGTTTCACATTTGCGGTGCGCGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCCAGTGTCAAGAAGGCCAAAGACTCTGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTATACTCATGA 5949 0.4413 MEGGNRVPGSGEGDPSYWLDACEDISCDFIDFDVSSIVSEQPDNASNQDFFGGIDRILDSIKNGGGLPLDAESNSNAPAEPAAAAAPPPPQQPWLPHDAPPSAAAHSKLQHSLTPLPASNGSAKNELVAEKHGRTADAFQHPRAETNGCNKLLNGNDEGRVLVGCFVENGGLSRGRDQLREYDVDGEERYCKRARLGNYKNDRHYSGRVNYQFKEKERCFNRKRPRDSRDEIDVRRDKDSSRKKEHYGNCGWRDVRDRDWRDREQRGYWERDKLGSNDMVFRMGTWEADRDREEKMANDTKQESNGKLDKTSEEAKERVPEEKARQYQLDVLEQAKTKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELERHVPMPSEVVVEYDKAGSLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKHAEVDDSKHETTCNGTEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADTLKGEWILSGKDAYNNSKLFHLYMYSVECENVGISKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGSIDISESQLATLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMISDKSVDPVKQIDWFLVETIIGSDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMVFGQKAHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHISLTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLRNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESTLFDQDTSISNTERMDCHTDEYEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKSAANHLMNWIGIQIEFDPDEMDCARKPFNVPESILRSVDFDALEGALNMKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGSIFLDSGRDTTIVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKNQKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS* 1983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 65 121 - -
Ahy16g1302 1982 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1820 1883 IPR014720 -
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 82 97 - -
Ahy16g1302 1982 CDD PAZ_CAF_like 1255 1404 - -
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 290 320 - -
Ahy16g1302 1982 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1904 1979 IPR014720 -
Ahy16g1302 1982 Gene3D - 1910 1980 - -
Ahy16g1302 1982 ProSiteProfiles Ribonuclease III family domain profile. 1646 1794 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 1005 1032 - -
Ahy16g1302 1982 PANTHER DICER-RELATED 279 1980 - -
Ahy16g1302 1982 SMART ultradead3 320 523 IPR014001 -
Ahy16g1302 1982 ProSiteProfiles PAZ domain profile. 1262 1402 IPR003100 GO:0005515
Ahy16g1302 1982 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 508 IPR014001 -
Ahy16g1302 1982 SMART riboneu5 1441 1625 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 SMART riboneu5 1661 1817 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 Gene3D - 717 883 IPR027417 -
Ahy16g1302 1982 Gene3D - 1818 1896 - -
Ahy16g1302 1982 CDD DEXHc_dicer 323 522 - -
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 674 689 - -
Ahy16g1302 1982 Pfam Dicer dimerisation domain 919 1007 - -
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 107 121 - -
Ahy16g1302 1982 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1904 1977 - -
Ahy16g1302 1982 SUPERFAMILY RNase III domain-like 1418 1623 IPR036389 GO:0004525|GO:0006396
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 1008 1032 - -
Ahy16g1302 1982 ProSitePatterns Ribonuclease III family signature. 1681 1689 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 SUPERFAMILY dsRNA-binding domain-like 1908 1978 - -
Ahy16g1302 1982 SMART DRBM_3 1821 1882 IPR014720 -
Ahy16g1302 1982 SMART DRBM_3 1905 1978 IPR014720 -
Ahy16g1302 1982 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 919 1014 IPR005034 GO:0016891
Ahy16g1302 1982 CDD RIBOc 1443 1623 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 SMART helicmild6 760 846 IPR001650 -
Ahy16g1302 1982 Gene3D Dicer dimerisation domain 914 1015 IPR038248 -
Ahy16g1302 1982 Gene3D Ribonuclease III domain 1643 1817 IPR036389 GO:0004525|GO:0006396
Ahy16g1302 1982 SUPERFAMILY dsRNA-binding domain-like 1776 1899 - -
Ahy16g1302 1982 Pfam PAZ domain 1284 1422 IPR003100 GO:0005515
Ahy16g1302 1982 SUPERFAMILY PAZ domain 1279 1402 IPR036085 GO:0005515
Ahy16g1302 1982 SMART PAZ_2_a_3 1262 1426 IPR003100 GO:0005515
Ahy16g1302 1982 Coils Coil 1874 1894 - -
Ahy16g1302 1982 Pfam Helicase conserved C-terminal domain 727 844 IPR001650 -
Ahy16g1302 1982 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 891 IPR001650 -
Ahy16g1302 1982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 858 IPR027417 -
Ahy16g1302 1982 Gene3D Ribonuclease III domain 1424 1617 IPR036389 GO:0004525|GO:0006396
Ahy16g1302 1982 Pfam Type III restriction enzyme, res subunit 326 490 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ahy16g1302 1982 SUPERFAMILY RNase III domain-like 1645 1815 IPR036389 GO:0004525|GO:0006396
Ahy16g1302 1982 Gene3D paz domain 1279 1400 - -
Ahy16g1302 1982 ProSiteProfiles Ribonuclease III family domain profile. 1445 1605 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 Gene3D - 318 562 IPR027417 -
Ahy16g1302 1982 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 279 1980 - -
Ahy16g1302 1982 CDD DSRM_DCL_plant 1910 1971 - -
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 674 693 - -
Ahy16g1302 1982 CDD RIBOc 1662 1817 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 CDD SF2_C_dicer 724 854 - -
Ahy16g1302 1982 Pfam Ribonuclease III domain 1681 1794 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 Pfam Ribonuclease III domain 1459 1605 IPR000999 GO:0004525|GO:0006396
Ahy16g1302 1982 MobiDBLite consensus disorder prediction 222 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g1302 Ahy-Chr16 24778270 24789313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g1302 743 886 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.89e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g1302 K11592 - gmx:100811631 3376.65